BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0180200 Os11g0180200|J090097B08
         (72 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71860.1  | chr1:27026866-27028675 FORWARD LENGTH=341          103   2e-23

>AT1G71860.1 | chr1:27026866-27028675 FORWARD LENGTH=341
          Length = 340

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 54/69 (78%)

Query: 2   SAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEDQYKFCYMAIVS 61
           SAGIGRTG Y  IHNTI+RIL GDMSALDL+KTV  FR QR GMVQT DQY FCY AIV 
Sbjct: 266 SAGIGRTGTYCAIHNTIQRILAGDMSALDLAKTVALFRKQRIGMVQTMDQYFFCYNAIVD 325

Query: 62  ELNDLLSNS 70
           EL DL + +
Sbjct: 326 ELEDLTAGT 334



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,255,877
Number of extensions: 34188
Number of successful extensions: 86
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)