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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0174800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tyrosine specific protein phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0131) R2 : 0.00634
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0472 (0.0276) R2dN8 : 0.00819 R2N8 : 0.00634
σ : 0.247
deviance : 28.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.81 0.147 9.21 -0.389 0.0991 -0.805 -0.194 -0.856 -0.218 11.3 26.57 27 -- --
10.72 0.153 9.22 -0.533 0.0932 -0.752 0.058 -- -0.248 11.3 27.61 25 -- --
9.94 0.147 9.21 -0.408 0.107 -0.797 -- -0.748 -0.216 11.4 26.66 27 -- --
10.73 0.153 9.22 -0.533 0.0942 -0.759 -- -- -0.247 11 27.75 21 -- --
10.32 0.15 9.22 -0.434 -- -0.841 -- -0.698 -0.232 -- 27.47 8 -- --
18.83 0.203 9.19 -0.356 0.303 -- 0.176 -- -0.0819 13.4 -- -- -- --
18.95 0.204 9.19 -0.35 0.302 -- -- -- -0.0811 13.3 -- -- -- --
11.1 0.155 9.23 -0.551 -- -0.821 -- -- -0.259 -- 27.91 8 -- --
17.46 0.196 9.2 -- 0.153 -0.543 -- -- -0.146 12.7 27.32 3 -- --
24.6 0.232 9.19 -0.362 -- -- -- -- -0.0873 -- -- -- -- --
22.18 0.22 9.18 -- 0.308 -- -- -- -0.0421 13.3 -- -- -- --
18.52 0.2 9.21 -- -- -0.666 -- -- -0.167 -- 27.98 3 -- --
28.05 0.247 9.18 -- -- -- -- -- -0.0472 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.05 temperature 25 30 < th dose dependent rect. 7 23
2 10.05 temperature 25 30 < th dose dependent rect. 9 23
3 10.05 temperature 25 30 < th dose dependent rect. 19 23
4 10.06 temperature 25 30 < th dose dependent no NA NA
5 10.06 temperature 25 30 < th dose dependent rect. 1 23
7 10.06 temperature 25 30 < th dose dependent rect. 15 23
10 10.07 temperature 25 30 < th dose dependent rect. 11 23
11 10.07 temperature 25 30 < th dose dependent rect. 13 23
12 10.07 temperature 25 30 < th dose dependent rect. 17 23
14 10.08 temperature 25 30 < th dose dependent rect. 21 23
15 10.08 temperature 25 30 < th dose dependent rect. 23 23
16 10.09 temperature 25 90 < th dose dependent rect. 5 23
23 10.11 temperature 25 30 < th dose dependent rect. 3 23
37 10.17 temperature 30 270 < th dose dependent rect. 10 23
55 10.25 temperature 10 270 > th dose dependent sin 13 NA
91 10.39 temperature 30 270 < th dose dependent sin 14 NA
286 10.79 temperature 25 720 < th dose dependent rect. 8 16
329 10.86 temperature 25 720 < th dose dependent sin 19 NA
355 10.90 temperature 10 720 > th dose dependent rect. 12 15
397 10.96 temperature 10 720 > th dose dependent sin 17 NA
416 10.97 temperature 15 270 > th dose dependent rect. 12 23
419 10.98 temperature 30 270 < th dose dependent rect. 15 13
442 11.01 temperature 10 270 > th dose dependent no NA NA
662 11.22 temperature 15 270 > th dose dependent rect. 1 23
714 11.26 temperature 15 270 > th dose dependent rect. 3 23
978 11.48 temperature 30 720 < th dose dependent rect. 15 6