BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0175500 Os11g0175500|AK064320
         (508 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0175500  Zinc finger, RING-type domain containing protein   1024   0.0  
Os08g0123300  Hypothetical protein                                181   2e-45

>Os11g0175500 Zinc finger, RING-type domain containing protein
          Length = 508

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/508 (97%), Positives = 493/508 (97%)

Query: 1   MDAGEXXXXXXXXXXXXXXXGGVWAKLVPSDSAFPEVELAEDDAVVCSRVTPDGGGEVAA 60
           MDAGE               GGVWAKLVPSDSAFPEVELAEDDAVVCSRVTPDGGGEVAA
Sbjct: 1   MDAGECSSSQPCASSSPDAAGGVWAKLVPSDSAFPEVELAEDDAVVCSRVTPDGGGEVAA 60

Query: 61  WCEIRRGGGDGDASSATIRNLSSDAIIVDGRVIQQEAVDIKPGSEIVSGPQKDGHLLYTF 120
           WCEIRRGGGDGDASSATIRNLSSDAIIVDGRVIQQEAVDIKPGSEIVSGPQKDGHLLYTF
Sbjct: 61  WCEIRRGGGDGDASSATIRNLSSDAIIVDGRVIQQEAVDIKPGSEIVSGPQKDGHLLYTF 120

Query: 121 DITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANS 180
           DITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANS
Sbjct: 121 DITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANS 180

Query: 181 RDKSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKTNIA 240
           RDKSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKTNIA
Sbjct: 181 RDKSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKTNIA 240

Query: 241 WHAFIPFPWSYAGAMILRSTMGINICQREVLGKQKIQSRKRRLPRSNDEANHTNHADFLC 300
           WHAFIPFPWSYAGAMILRSTMGINICQREVLGKQKIQSRKRRLPRSNDEANHTNHADFLC
Sbjct: 241 WHAFIPFPWSYAGAMILRSTMGINICQREVLGKQKIQSRKRRLPRSNDEANHTNHADFLC 300

Query: 301 PQCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSS 360
           PQCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSS
Sbjct: 301 PQCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSS 360

Query: 361 QHNPICDQETFKMISQRHISSVPDTVHGGNQYEKDITERCIQQSGKALQAIISEWIVKFD 420
           QHNPICDQETFKMISQRHISSVPDTVHGGNQYEKDITERCIQQSGKALQAIISEWIVKFD
Sbjct: 361 QHNPICDQETFKMISQRHISSVPDTVHGGNQYEKDITERCIQQSGKALQAIISEWIVKFD 420

Query: 421 NKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFRVSMPRNLLPPDAANRESCWY 480
           NKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFRVSMPRNLLPPDAANRESCWY
Sbjct: 421 NKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFRVSMPRNLLPPDAANRESCWY 480

Query: 481 GFMCRTQHHRPDHAKKLNHVCRPTRGNP 508
           GFMCRTQHHRPDHAKKLNHVCRPTRGNP
Sbjct: 481 GFMCRTQHHRPDHAKKLNHVCRPTRGNP 508



>Os08g0123300 Hypothetical protein
          Length = 105

 Score =  181 bits (458), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/101 (87%), Positives = 92/101 (91%), Gaps = 3/101 (2%)

Query: 27  LVPSDSAFPEVELAEDDAVVCSRVTPDGGGEVAAWCEIRRGGGDGDASSATIRNLSSDAI 86
           +VPSDS FPEVELAEDDAVVCSRVTPDGGGEV AWC+IRRGG   D S+ATI NLS DAI
Sbjct: 8   VVPSDSVFPEVELAEDDAVVCSRVTPDGGGEVVAWCKIRRGG---DVSAATIWNLSLDAI 64

Query: 87  IVDGRVIQQEAVDIKPGSEIVSGPQKDGHLLYTFDITGLND 127
           IVDGRVIQQEAVDIKPGSEIV GPQKDG+LLYTFDITGLND
Sbjct: 65  IVDGRVIQQEAVDIKPGSEIVPGPQKDGYLLYTFDITGLND 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,901,942
Number of extensions: 839971
Number of successful extensions: 2848
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2847
Number of HSP's successfully gapped: 2
Length of query: 508
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 403
Effective length of database: 11,553,331
Effective search space: 4655992393
Effective search space used: 4655992393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)