BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0168200 Os11g0168200|AK073392
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0168200 60S ribosomal protein L3 774 0.0
Os12g0167900 60S ribosomal protein L3 770 0.0
AK109100 570 e-163
AK105522 508 e-144
>Os11g0168200 60S ribosomal protein L3
Length = 389
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/389 (96%), Positives = 377/389 (96%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAXXXXXXXXXXXXGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
EKPGSKLHKKETCEA GLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
KFIDTSSKFGHGRFQTTDEKQRFFGKLKA
Sbjct: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
>Os12g0167900 60S ribosomal protein L3
Length = 389
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/389 (96%), Positives = 376/389 (96%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDV+KPCHLTSFVGYKAGMTHIVREV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAXXXXXXXXXXXXGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
EKPGSKLHKKETCEA GLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYAS+VRVI HTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
KFIDTSSKFGHGRFQTTDEKQRFFGKLKA
Sbjct: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
>AK109100
Length = 386
Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/388 (70%), Positives = 322/388 (82%), Gaps = 3/388 (0%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
MSHRKFEHPR GSLGFLP+KR R RGK KSFP+DD +KPCHLT F+GYKAGMTHI+R+V
Sbjct: 1 MSHRKFEHPRCGSLGFLPKKRCRRGRGKFKSFPRDDASKPCHLTGFIGYKAGMTHILRDV 60
Query: 61 EKPGSKLHKKETCEAXXXXXXXXXXXXGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
+KPGSKLHKKETCE G+V YVKTPRGLR+LN+VWA+HLS+E +RRFYK
Sbjct: 61 DKPGSKLHKKETCEPVTIVECPPMIVVGVVGYVKTPRGLRTLNTVWAEHLSDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
NW K+KKKAFTKY KY GKKEI +L ++KK+ SV+RV+ HTQ+RK+ GL QKKAH
Sbjct: 121 NWYKAKKKAFTKYVKKYTD--GKKEIDSELAQLKKHCSVIRVLAHTQVRKL-GLGQKKAH 177
Query: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L+EIQ+NGG++ADKVD+ K FEK + VD+VF +EMID I +TKG G EGVVTRWGVTR
Sbjct: 178 LIEIQVNGGSVADKVDFATKLFEKAVTVDSVFNTNEMIDTIAITKGGGTEGVVTRWGVTR 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
LPRKTHRGLRKVAC+GAWHPAR+ ++VARAGQ G+HHRTE+NKKVYKIGK G++SH A T
Sbjct: 238 LPRKTHRGLRKVACVGAWHPARLQWSVARAGQMGFHHRTEINKKVYKIGKKGEDSHNAGT 297
Query: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD + K+ITPMGGFPHYGVVK DYLMIKG G KKR +TLR+SLL QTSR ALEEIKL
Sbjct: 298 DFDVSSKEITPMGGFPHYGVVKEDYLMIKGAVPGTKKRPITLRRSLLAQTSRSALEEIKL 357
Query: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
KF+DTSSKFGHGRFQT DEK + +G+ K
Sbjct: 358 KFVDTSSKFGHGRFQTYDEKLKTYGRTK 385
>AK105522
Length = 412
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/394 (61%), Positives = 300/394 (76%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
MSHRKF PRHGS +LPRKR S HRGKVKSFPKDD KP HLT+F+GYKAGMTHIVREV
Sbjct: 1 MSHRKFHAPRHGSTAYLPRKRCSHHRGKVKSFPKDDKTKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAXXXXXXXXXXXXGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
+KPGSK++KKE EA G+V Y++TPRGLR+L +++A+HLS++ RRRFYK
Sbjct: 61 DKPGSKVNKKEVVEAVTIIETPPMVIVGVVGYIETPRGLRALKTIFAEHLSDDARRRFYK 120
Query: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
NWCKSKKKAFTK K+ G K I+ +K++KY +VVRVI HTQ+ +K +QKKAH
Sbjct: 121 NWCKSKKKAFTKAQAKWQQPEGLKIIERDFKKIQKYCTVVRVIAHTQMAMLK-RRQKKAH 179
Query: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG+IADK+ + + EK +P+ +VF +DEMIDIIGVTKG G +GV +RW +
Sbjct: 180 IMEIQLNGGSIADKLKFAREHMEKAVPIKSVFAQDEMIDIIGVTKGHGVKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQE------ 294
LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEINKKIYRLGDGFHTTDGKLV 299
Query: 295 SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
S+ TE+D T K I PMGGF HYG VK D++M+KGC +GP+KRV+TLR+SL+ QT R A
Sbjct: 300 SNNGSTEYDNTNKSINPMGGFKHYGEVKQDFVMLKGCVMGPRKRVITLRKSLITQTKRAA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
E I LKFIDTSSK GHGRFQT +EK F G LK
Sbjct: 360 TENITLKFIDTSSKMGHGRFQTHEEKAAFMGPLK 393
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,983,592
Number of extensions: 521569
Number of successful extensions: 958
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 4
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)