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Os12g0167900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 60S ribosomal protein L3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.029) R2 : 0.104
β1 : 0.741 (0.106) R2dD : 0.0994 R2D : 0.103
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0421 (0.0619) R2dN8 : 0.00122 R2N8 : 0.00464
σ : 0.544
deviance : 135.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.97 0.47 12 0.763 0.612 0.884 1.2 1.7 -0.063 19.4 18.15 85 -- --
103.56 0.474 12 0.796 0.606 0.662 0.937 -- -0.0576 18.9 16.29 81 -- --
103.52 0.474 12 0.751 0.613 0.819 -- 1.38 -0.0551 18.9 21.14 85 -- --
105.83 0.479 12 0.752 0.63 0.689 -- -- -0.0517 19.2 11.59 70 -- --
120.58 0.511 12 0.739 -- 0.747 -- 1.33 -0.0711 -- 18.86 164 -- --
110.57 0.493 12 0.766 0.651 -- 0.979 -- -0.0304 17.5 -- -- -- --
112.91 0.498 12 0.763 0.657 -- -- -- -0.0259 17.4 -- -- -- --
120.42 0.511 12 0.711 -- 0.646 -- -- -0.102 -- -4.87 679 -- --
121.13 0.515 12 -- 0.634 0.645 -- -- -0.105 19.1 10.08 73 -- --
135.41 0.544 12 0.741 -- -- -- -- -0.0421 -- -- -- -- --
128.26 0.53 12 -- 0.644 -- -- -- -0.111 17.4 -- -- -- --
133.73 0.539 12 -- -- 0.668 -- -- -0.184 -- -21.04 697 -- --
149.89 0.571 12 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.31 radiation 40.0 90 < th dose independent rect. 3 16
2 94.86 temperature 15.0 270 > th dose dependent rect. 9 1
5 95.19 radiation 1.0 270 > th dose dependent rect. 9 1
6 95.19 temperature 10.0 10 > th dose dependent rect. 9 5
8 95.35 temperature 10.0 90 > th dose dependent rect. 8 7
16 95.66 radiation 40.0 10 < th dose independent rect. 4 16
21 95.95 temperature 10.0 10 > th dose dependent rect. 14 19
22 96.02 humidity 50.0 30 > th dose independent rect. 9 5
25 96.08 temperature 10.0 10 > th dose dependent rect. 3 6
28 96.22 temperature 15.0 10 > th dose independent rect. 14 19
30 96.26 wind 5.0 90 < th dose independent rect. 3 5
31 96.32 radiation 40.0 10 < th dose independent rect. 12 21
35 96.38 radiation 1.0 270 > th dose dependent rect. 8 3
45 96.50 humidity 50.0 270 > th dose independent rect. 5 22
46 96.51 precipitation 0.1 270 < th dose independent rect. 10 23
47 96.51 precipitation 0.1 270 < th dose dependent rect. 10 23
50 96.61 wind 1.0 30 > th dose independent rect. 9 5
52 96.64 radiation 40.0 90 < th dose dependent rect. 3 16
56 96.66 precipitation 0.1 10 < th dose independent rect. 3 6
58 96.66 precipitation 0.1 10 < th dose dependent rect. 3 6
64 96.73 radiation 1.0 10 > th dose independent rect. 9 5
65 96.73 temperature 15.0 90 > th dose independent rect. 15 17
66 96.74 wind 5.0 10 < th dose independent rect. 3 6
74 96.81 temperature 10.0 270 > th dose dependent rect. 6 7
75 96.82 radiation 1.0 90 > th dose dependent rect. 8 6
78 96.87 precipitation 0.1 90 < th dose independent rect. 3 5
79 96.87 precipitation 0.1 90 < th dose dependent rect. 3 5
83 96.93 temperature 10.0 43200 > th dose independent rect. 9 7
88 96.99 radiation 20.0 270 > th dose independent rect. 9 1
89 96.99 temperature 10.0 10 > th dose independent rect. 9 5
91 96.99 atmosphere 995.0 10 > th dose independent rect. 9 5
92 96.99 atmosphere 1015.0 10 < th dose independent rect. 9 5
93 96.99 precipitation 0.1 10 < th dose independent rect. 9 5
95 96.99 precipitation 0.1 10 < th dose dependent rect. 9 5
96 97.00 humidity 50.0 270 > th dose independent rect. 9 1
97 97.00 wind 5.0 270 < th dose independent rect. 1 6
98 97.00 humidity 50.0 270 > th dose independent rect. 7 18
99 97.01 wind 9.0 90 < th dose dependent rect. 3 5
105 97.03 wind 9.0 10 < th dose dependent rect. 3 6
110 97.06 radiation 30.0 90 < th dose independent rect. 3 6
111 97.07 precipitation 0.1 10 < th dose independent rect. 14 19
113 97.07 precipitation 0.1 10 < th dose dependent rect. 14 19
115 97.09 precipitation 0.1 10 < th dose independent rect. 9 18
119 97.09 precipitation 0.1 10 < th dose dependent rect. 9 18
137 97.16 precipitation 0.1 90 < th dose independent rect. 15 17
139 97.16 precipitation 0.1 90 < th dose dependent rect. 15 17
144 97.20 temperature 10.0 1440 > th dose independent rect. 10 5
147 97.20 temperature 10.0 1440 > th dose independent rect. 15 19
155 97.25 wind 9.0 10 < th dose independent rect. 9 5
161 97.27 temperature 10.0 90 > th dose independent rect. 3 5
163 97.27 temperature 30.0 90 < th dose independent rect. 3 5
164 97.27 humidity 50.0 90 > th dose independent rect. 3 5
166 97.27 atmosphere 995.0 90 > th dose independent rect. 3 5
167 97.27 atmosphere 1015.0 90 < th dose independent rect. 3 5
168 97.27 precipitation 0.1 90 < th dose independent rect. 8 7
169 97.27 temperature 10.0 90 > th dose independent rect. 8 19
171 97.27 precipitation 0.1 90 < th dose dependent rect. 8 7
173 97.28 radiation 40.0 90 < th dose independent rect. 13 19
177 97.29 wind 9.0 90 < th dose independent rect. 8 19
183 97.31 wind 5.0 270 < th dose independent rect. 23 9
190 97.33 humidity 60.0 270 > th dose independent rect. 17 10
197 97.36 wind 1.0 270 > th dose independent rect. 9 1
200 97.36 atmosphere 995.0 10 > th dose independent rect. 14 19
204 97.38 temperature 10.0 270 > th dose independent rect. 9 1
205 97.38 atmosphere 995.0 270 > th dose independent rect. 9 1
206 97.38 atmosphere 1015.0 270 < th dose independent rect. 9 1
208 97.38 temperature 10.0 270 > th dose independent rect. 10 23
210 97.39 precipitation 0.1 270 < th dose independent rect. 9 1
211 97.39 radiation 30.0 90 < th dose independent rect. 3 8
212 97.39 precipitation 0.1 270 < th dose dependent rect. 9 1
226 97.40 radiation 1.0 270 < th dose dependent rect. 5 22
230 97.42 temperature 10.0 10 > th dose independent rect. 3 6
232 97.42 temperature 30.0 10 < th dose independent rect. 3 6
233 97.42 humidity 50.0 10 > th dose independent rect. 3 6
235 97.42 atmosphere 995.0 10 > th dose independent rect. 3 6
236 97.42 atmosphere 1015.0 10 < th dose independent rect. 3 6
237 97.42 temperature 10.0 10 > th dose independent rect. 9 18
239 97.42 humidity 50.0 270 > th dose dependent rect. 17 9
240 97.43 wind 5.0 270 < th dose independent rect. 3 2
242 97.43 temperature 10.0 90 > th dose independent rect. 8 7
243 97.43 atmosphere 1015.0 90 < th dose independent rect. 8 7
249 97.44 wind 9.0 30 < th dose independent rect. 14 19
252 97.45 wind 9.0 270 < th dose independent rect. 9 1
253 97.45 atmosphere 1000.0 10 > th dose dependent rect. 3 6
260 97.48 humidity 50.0 270 > th dose independent rect. 8 15
277 97.54 wind 9.0 10 < th dose independent rect. 9 18
300 97.57 radiation 10.0 270 < th dose dependent rect. 17 10
325 97.61 humidity 50.0 90 > th dose dependent rect. 19 8
340 97.63 wind 9.0 90 < th dose independent rect. 8 7
351 97.66 precipitation 0.1 90 < th dose independent rect. 3 16
353 97.66 precipitation 0.1 90 < th dose dependent rect. 3 16
354 97.67 atmosphere 1015.0 10 < th dose independent rect. 14 19
395 97.78 temperature 15.0 90 > th dose independent rect. 3 16
398 97.78 temperature 15.0 10 > th dose dependent rect. 24 9
400 97.79 temperature 30.0 270 < th dose independent rect. 17 10
401 97.79 radiation 1.0 10 > th dose dependent rect. 9 5
404 97.80 atmosphere 1005.0 10 > th dose independent rect. 3 6
405 97.80 radiation 1.0 270 > th dose dependent sin 8 NA
433 97.86 precipitation 0.1 270 < th dose independent rect. 3 2
436 97.86 precipitation 0.1 270 < th dose dependent rect. 3 2
441 97.87 wind 9.0 90 < th dose independent rect. 15 17
447 97.88 atmosphere 1015.0 10 < th dose dependent rect. 9 5
450 97.90 atmosphere 1000.0 270 > th dose dependent rect. 24 7
508 97.98 radiation 1.0 270 > th dose independent rect. 9 1
510 97.98 humidity 50.0 270 > th dose independent rect. 19 17
517 98.01 atmosphere 995.0 90 > th dose independent rect. 8 19
531 98.05 humidity 50.0 270 > th dose independent rect. 6 7
532 98.05 precipitation 0.1 270 < th dose independent rect. 3 14
536 98.05 precipitation 0.1 270 < th dose dependent rect. 3 14
537 98.05 radiation 40.0 10 < th dose dependent rect. 4 16
539 98.06 atmosphere 995.0 10 > th dose independent rect. 9 18
543 98.06 atmosphere 1015.0 90 < th dose dependent rect. 8 7
569 98.09 radiation 20.0 90 > th dose dependent sin 6 NA
575 98.11 temperature 10.0 1440 > th dose independent rect. 3 7
578 98.11 atmosphere 995.0 1440 > th dose independent rect. 3 7
580 98.11 temperature 10.0 1440 > th dose independent rect. 10 17
586 98.12 radiation 10.0 270 < th dose independent rect. 17 10
607 98.16 radiation 1.0 90 > th dose independent rect. 14 18
625 98.19 wind 7.0 90 < th dose independent rect. 19 8
641 98.23 wind 9.0 270 < th dose dependent rect. 3 2
659 98.27 radiation 40.0 270 > th dose independent rect. 9 1
662 98.27 radiation 1.0 90 < th dose dependent rect. 19 8
667 98.28 temperature 10.0 90 > th dose independent rect. 19 8
669 98.28 humidity 50.0 90 > th dose independent rect. 19 8
671 98.28 atmosphere 995.0 90 > th dose independent rect. 19 8
672 98.28 radiation 1.0 90 < th dose independent rect. 19 8
678 98.28 atmosphere 1015.0 90 < th dose independent rect. 3 16
690 98.29 radiation 40.0 270 < th dose dependent sin 7 NA
703 98.30 radiation 20.0 270 > th dose independent rect. 8 3
706 98.31 atmosphere 1005.0 270 > th dose independent rect. 24 7
736 98.37 precipitation 0.1 270 < th dose independent rect. 23 9
737 98.37 precipitation 0.1 270 < th dose dependent rect. 23 9
738 98.38 atmosphere 1015.0 270 < th dose dependent rect. 9 1
750 98.40 wind 9.0 270 < th dose independent rect. 5 22
755 98.41 precipitation 0.1 90 < th dose independent rect. 19 8
757 98.41 precipitation 0.1 90 < th dose dependent rect. 19 8
776 98.44 humidity 90.0 10 < th dose dependent rect. 15 18
777 98.45 radiation 1.0 90 > th dose independent sin 13 NA
779 98.45 radiation 1.0 90 > th dose independent rect. 17 15
822 98.50 precipitation 0.1 270 < th dose independent rect. 12 7
823 98.50 temperature 15.0 270 > th dose independent rect. 3 14
828 98.50 precipitation 0.1 270 < th dose dependent rect. 12 7
840 98.53 radiation 40.0 10 < th dose independent rect. 12 8
847 98.54 humidity 90.0 10 < th dose independent rect. 9 5
860 98.56 wind 9.0 270 < th dose independent rect. 6 8
861 98.56 precipitation 0.1 270 < th dose independent rect. 6 8
865 98.56 precipitation 0.1 270 < th dose dependent rect. 6 8
870 98.57 wind 9.0 90 < th dose independent rect. 3 16
879 98.59 radiation 20.0 270 < th dose independent rect. 23 9
903 98.61 temperature 10.0 270 > th dose independent rect. 3 2
905 98.61 temperature 30.0 270 < th dose independent rect. 3 2
906 98.61 humidity 50.0 270 > th dose independent rect. 3 2
909 98.61 atmosphere 995.0 270 > th dose independent rect. 3 2
910 98.61 atmosphere 1010.0 270 < th dose independent rect. 3 2
912 98.61 radiation 20.0 270 < th dose independent rect. 3 2
919 98.61 temperature 10.0 270 > th dose independent rect. 5 22
929 98.62 radiation 1.0 90 < th dose dependent sin 13 NA
946 98.63 radiation 1.0 270 > th dose independent rect. 12 18
947 98.63 radiation 40.0 270 < th dose dependent rect. 3 2
966 98.67 temperature 10.0 270 > th dose independent rect. 6 8
967 98.67 atmosphere 995.0 270 > th dose independent rect. 6 8
968 98.67 atmosphere 1015.0 270 < th dose independent rect. 6 8
971 98.67 wind 1.0 30 > th dose independent rect. 9 18
989 98.69 radiation 1.0 270 < th dose independent rect. 3 2