FiT-DB / Search/ Help/ Sample detail

Os11g0168200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 60S ribosomal protein L3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0236) R2 : 0.561
β1 : 1.32 (0.0863) R2dD : 0.233 R2D : 0.184
β2 : 1.16 (0.0615) R2dC : 0.343 R2C : 0.316
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.304 (0.0503) R2dN8 : 0.0471 R2N8 : -0.00556
σ : 0.443
deviance : 89.59
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.74 0.417 13.2 1.34 1.13 -0.705 0.867 -1.26 0.272 18.3 39.5 71 -- --
81.27 0.42 13.1 1.33 1.12 -0.627 0.875 -- 0.272 18.2 40.09 70 -- --
80.58 0.418 13.2 1.33 1.13 -0.687 -- -1.25 0.275 18.3 39.49 70 -- --
82.9 0.424 13.1 1.33 1.13 -0.64 -- -- 0.273 18.2 40.02 70 -- --
99.08 0.464 13.1 1.42 -- -1 -- 0.391 0.308 -- 0.06236 644 -- --
88.16 0.44 13.1 1.32 1.15 -- 0.764 -- 0.301 17.6 -- -- -- --
89.59 0.443 13.1 1.32 1.16 -- -- -- 0.304 17.6 -- -- -- --
92.98 0.449 13.1 1.21 -- -1.25 -- -- 0.352 -- 0.01257 660 -- --
127.6 0.526 13.2 -- 1.08 -0.521 -- -- 0.123 18.3 30.04 125 -- --
159.36 0.59 13.1 1.28 -- -- -- -- 0.276 -- -- -- -- --
135.49 0.545 13.2 -- 1.14 -- -- -- 0.157 17.7 -- -- -- --
132.62 0.536 13.1 -- -- -1.44 -- -- 0.342 -- 0.05 711 -- --
202.74 0.665 13.2 -- -- -- -- -- 0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.19 temperature 20.0 270 > th dose dependent rect. 9 1
2 72.46 temperature 20.0 90 > th dose dependent rect. 8 7
4 72.54 temperature 20.0 10 > th dose dependent rect. 9 6
8 72.89 temperature 20.0 270 > th dose dependent rect. 8 3
139 76.13 temperature 10.0 10 > th dose dependent rect. 9 18
142 76.20 radiation 1.0 270 > th dose dependent rect. 9 1
163 76.49 temperature 25.0 270 > th dose independent rect. 9 1
165 76.51 radiation 40.0 270 > th dose independent rect. 9 1
198 76.73 radiation 40.0 90 < th dose independent rect. 3 16
201 76.74 temperature 25.0 270 > th dose independent rect. 8 3
207 76.81 temperature 25.0 90 > th dose dependent rect. 20 18
208 76.82 atmosphere 1005.0 90 > th dose dependent rect. 3 5
209 76.83 atmosphere 1000.0 10 > th dose dependent rect. 3 6
223 76.93 wind 5.0 90 < th dose independent rect. 3 5
233 77.01 radiation 40.0 10 < th dose independent rect. 4 16
255 77.15 wind 5.0 270 < th dose independent rect. 4 1
261 77.18 temperature 10.0 10 > th dose dependent rect. 9 15
262 77.18 temperature 25.0 270 > th dose dependent rect. 20 16
281 77.29 temperature 25.0 90 > th dose dependent sin 5 NA
297 77.36 radiation 30.0 90 < th dose independent rect. 3 6
303 77.39 radiation 30.0 270 > th dose dependent rect. 8 2
309 77.44 temperature 25.0 10 > th dose independent rect. 9 6
314 77.47 atmosphere 1005.0 270 > th dose dependent rect. 4 1
341 77.52 humidity 90.0 10 < th dose independent rect. 2 7
346 77.53 temperature 10.0 10 > th dose dependent rect. 3 6
347 77.53 radiation 1.0 90 > th dose dependent rect. 8 6
357 77.59 temperature 15.0 10 > th dose independent rect. 15 18
360 77.60 wind 5.0 270 < th dose independent rect. 1 6
373 77.65 temperature 15.0 90 > th dose independent rect. 15 17
376 77.66 temperature 10.0 43200 > th dose independent rect. 10 6
377 77.66 temperature 10.0 90 > th dose dependent rect. 3 5
384 77.69 wind 9.0 90 < th dose independent rect. 8 19
386 77.70 atmosphere 1015.0 10 < th dose independent rect. 15 18
388 77.71 humidity 90.0 10 < th dose independent rect. 9 6
391 77.72 temperature 30.0 90 < th dose independent rect. 3 6
392 77.72 radiation 1.0 10 > th dose independent rect. 9 6
393 77.73 atmosphere 1000.0 270 > th dose dependent rect. 24 7
408 77.78 precipitation 0.1 90 < th dose independent rect. 3 5
410 77.78 precipitation 0.1 90 < th dose dependent rect. 3 5
416 77.80 radiation 40.0 90 < th dose independent rect. 11 22
422 77.81 precipitation 0.1 90 < th dose independent rect. 8 19
425 77.81 precipitation 0.1 90 < th dose dependent rect. 8 19
428 77.82 precipitation 0.1 90 < th dose independent rect. 8 7
429 77.82 precipitation 0.1 90 < th dose dependent rect. 8 7
431 77.83 radiation 30.0 90 < th dose independent rect. 13 20
450 77.88 temperature 15.0 90 > th dose independent rect. 8 7
451 77.88 radiation 40.0 10 < th dose independent rect. 12 21
455 77.90 wind 1.0 30 > th dose independent rect. 9 6
458 77.90 wind 9.0 10 < th dose independent rect. 9 19
471 77.94 temperature 10.0 90 > th dose independent rect. 3 5
474 77.94 humidity 50.0 90 > th dose independent rect. 3 5
476 77.94 atmosphere 995.0 90 > th dose independent rect. 3 5
477 77.94 atmosphere 1015.0 90 < th dose independent rect. 3 5
478 77.94 radiation 30.0 90 < th dose independent rect. 3 8
479 77.94 temperature 10.0 90 > th dose independent rect. 8 19
489 77.97 radiation 40.0 270 > th dose independent sin 11 NA
490 77.97 temperature 10.0 10 > th dose independent rect. 9 6
492 77.97 atmosphere 995.0 10 > th dose independent rect. 9 6
493 77.97 atmosphere 1015.0 10 < th dose independent rect. 9 6
494 77.97 precipitation 0.1 10 < th dose independent rect. 9 6
496 77.97 radiation 1.0 270 > th dose dependent sin 8 NA
497 77.97 precipitation 0.1 10 < th dose dependent rect. 9 6
501 77.99 atmosphere 1015.0 90 < th dose independent rect. 8 7
502 77.99 temperature 30.0 90 < th dose independent rect. 3 16
504 77.99 wind 9.0 90 < th dose dependent rect. 3 5
506 78.00 precipitation 0.1 10 < th dose independent rect. 3 6
509 78.00 wind 9.0 10 < th dose dependent rect. 4 5
510 78.00 precipitation 0.1 10 < th dose dependent rect. 3 6
516 78.01 wind 9.0 90 < th dose independent rect. 8 7
554 78.04 precipitation 0.1 10 < th dose independent rect. 9 18
560 78.04 precipitation 0.1 10 < th dose dependent rect. 9 18
562 78.05 wind 9.0 10 < th dose independent rect. 9 6
602 78.11 temperature 10.0 10 > th dose independent rect. 4 5
604 78.11 temperature 30.0 10 < th dose independent rect. 4 5
605 78.11 humidity 50.0 10 > th dose independent rect. 4 5
607 78.11 atmosphere 995.0 10 > th dose independent rect. 4 5
608 78.11 atmosphere 1015.0 10 < th dose independent rect. 4 5
612 78.11 temperature 10.0 10 > th dose independent rect. 9 19
615 78.12 temperature 10.0 1440 > th dose independent rect. 10 6
620 78.12 temperature 10.0 1440 > th dose independent rect. 16 18
669 78.17 radiation 40.0 270 < th dose dependent sin 8 NA
680 78.19 humidity 50.0 30 > th dose independent rect. 9 6
717 78.25 wind 9.0 270 < th dose dependent rect. 4 1
733 78.26 radiation 40.0 90 < th dose independent rect. 15 17
735 78.27 precipitation 0.1 270 < th dose independent rect. 3 2
746 78.27 precipitation 0.1 270 < th dose dependent rect. 3 2
769 78.28 wind 9.0 30 < th dose independent rect. 15 18
774 78.28 radiation 40.0 270 < th dose dependent rect. 2 15
779 78.29 atmosphere 995.0 10 > th dose independent rect. 15 18
782 78.30 wind 9.0 270 < th dose independent rect. 5 22
841 78.33 radiation 30.0 270 > th dose dependent sin 11 NA
848 78.34 temperature 30.0 90 < th dose independent sin 6 NA
882 78.41 radiation 1.0 270 > th dose independent rect. 9 1
890 78.44 radiation 40.0 90 > th dose independent sin 7 NA
893 78.44 precipitation 0.1 10 < th dose independent rect. 15 18
896 78.44 precipitation 0.1 10 < th dose dependent rect. 15 18
902 78.46 temperature 15.0 270 > th dose independent rect. 9 1
916 78.47 humidity 70.0 90 > th dose independent rect. 3 8
920 78.48 radiation 20.0 270 > th dose independent rect. 9 1
922 78.48 atmosphere 995.0 90 > th dose independent rect. 8 19
931 78.49 humidity 50.0 30 > th dose independent rect. 9 19
938 78.51 wind 1.0 270 > th dose independent rect. 3 2
949 78.52 atmosphere 1005.0 10 > th dose independent rect. 3 6
956 78.53 atmosphere 995.0 10 > th dose independent rect. 9 19
962 78.54 precipitation 0.1 90 < th dose independent rect. 15 17
964 78.54 radiation 40.0 10 < th dose independent rect. 15 18
968 78.54 precipitation 0.1 90 < th dose dependent rect. 15 17
969 78.55 humidity 50.0 270 > th dose independent rect. 9 1
973 78.55 radiation 1.0 270 < th dose dependent rect. 4 1
976 78.56 radiation 40.0 90 < th dose independent sin 7 NA
999 78.60 temperature 10.0 270 > th dose independent rect. 4 1