BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0168000 Os11g0168000|AK062599
         (144 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0168000  Protein of unknown function DUF1278 family pro...   160   3e-40
Os12g0167601                                                      100   5e-22
Os03g0296600  Similar to ECA1 protein                              91   4e-19

>Os11g0168000 Protein of unknown function DUF1278 family protein
          Length = 144

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 86/104 (82%)

Query: 19  GGSSTTTVPPLEERLXXXXXXXXXXXXXXXXXXWMMECWSAVTKLGSCTNEIVLFFVNGE 78
           GGSSTTTVPPLEERL                  WMMECWSAVTKLGSCTNEIVLFFVNGE
Sbjct: 19  GGSSTTTVPPLEERLGAAFDGMAAAAEGGGGGGWMMECWSAVTKLGSCTNEIVLFFVNGE 78

Query: 79  SYLGPDCCVAIRTVTRRCWPAMLASIGFTAQEADILRGFCDAEL 122
           SYLGPDCCVAIRTVTRRCWPAMLASIGFTAQEADILRGFCDAEL
Sbjct: 79  SYLGPDCCVAIRTVTRRCWPAMLASIGFTAQEADILRGFCDAEL 122



>Os12g0167601 
          Length = 139

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 54  MECWSAVTKLGSCTNEIVLFFVNGES-YLGPDCCVAIRTVTRRCWPAMLASIGFTAQEAD 112
           +ECWSAV +L SCT+EIVLFF+NGE+  LG  CC A+R  TR CWPAMLA++GFTA+EAD
Sbjct: 55  VECWSAVAELRSCTDEIVLFFLNGETTQLGAGCCRAVRAATRDCWPAMLAAVGFTAEEAD 114

Query: 113 ILRGFCD 119
           +LRG CD
Sbjct: 115 VLRGLCD 121



>Os03g0296600 Similar to ECA1 protein
          Length = 151

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 53  MMECWSAVTKLGSCTNEIVLFFVNGESYLGPDCCVAIRTVTRRCWP--AMLASIGFTAQE 110
             +CW  + ++ SCT EI+LFF+NGE+YLGP CC AIR + + CW   AML+ IGFT +E
Sbjct: 44  QQQCWEVLMEIKSCTGEILLFFINGEAYLGPGCCRAIRVIEQSCWATDAMLSVIGFTPEE 103

Query: 111 ADILRGFCDA 120
            D+L+G+CDA
Sbjct: 104 GDMLKGYCDA 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,911,898
Number of extensions: 81262
Number of successful extensions: 171
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 3
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)