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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0168000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1278 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.034) R2 : 0.00966
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0715) R2dN8 : 0.0125 R2N8 : 0.00966
σ : 0.639
deviance : 187.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.52 0.633 2.92 0.331 0.867 1.21 -1.83 -2.5 0.245 17.7 1.513 741 -- --
180.67 0.626 2.95 0.318 0.654 1.15 -0.0302 -- 0.177 19 0.02448 906 -- --
180.44 0.626 2.94 0.311 0.729 1.19 -- -0.338 0.223 18.6 0.02999 863 -- --
180.34 0.625 2.93 0.313 0.752 1.26 -- -- 0.216 18.6 0.02998 856 -- --
184.1 0.632 2.88 0.37 -- 1.02 -- 0.211 0.338 -- 0.08436 1366 -- --
186.65 0.64 2.92 0.154 0.0803 -- 0.0593 -- 0.167 7.75 -- -- -- --
186.66 0.64 2.92 0.156 0.0802 -- -- -- 0.167 7.84 -- -- -- --
182.46 0.629 2.88 0.352 -- 0.654 -- -- 0.267 -- 0.03 1387 -- --
182.69 0.63 2.93 -- 0.764 1.25 -- -- 0.193 18.7 0.04017 856 -- --
187 0.639 2.92 0.157 -- -- -- -- 0.168 -- -- -- -- --
187.29 0.64 2.93 -- 0.0814 -- -- -- 0.15 7.71 -- -- -- --
184.53 0.633 2.92 -- -- 0.467 -- -- 0.181 -- 0.12 1306 -- --
187.65 0.639 2.93 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.22 humidity 90.0 30 > th dose dependent rect. 5 18
7 175.72 humidity 90.0 90 > th dose dependent rect. 20 1
9 176.54 humidity 90.0 90 > th dose dependent rect. 19 3
14 176.70 atmosphere 1005.0 90 < th dose independent rect. 20 1
18 177.01 humidity 90.0 30 > th dose dependent rect. 9 14
20 177.06 humidity 90.0 30 > th dose dependent rect. 11 12
30 177.51 radiation 1.0 1440 < th dose independent rect. 9 7
32 177.54 radiation 1.0 1440 > th dose independent rect. 8 8
36 177.57 atmosphere 1005.0 10 < th dose dependent rect. 5 1
79 178.04 humidity 90.0 30 > th dose dependent sin 21 NA
91 178.23 radiation 40.0 90 < th dose independent rect. 6 16
94 178.33 radiation 1.0 1440 > th dose independent rect. 8 5
95 178.34 radiation 1.0 1440 < th dose dependent rect. 15 1
99 178.41 humidity 90.0 720 > th dose dependent rect. 20 1
101 178.42 radiation 1.0 1440 > th dose independent rect. 9 3
106 178.48 radiation 1.0 1440 < th dose dependent rect. 8 8
119 178.62 radiation 1.0 1440 < th dose independent rect. 9 4
120 178.62 radiation 1.0 1440 < th dose dependent rect. 9 4
127 178.70 temperature 30.0 30 < th dose independent rect. 23 17
156 178.97 radiation 40.0 270 > th dose independent rect. 11 1
173 179.03 radiation 1.0 1440 < th dose dependent rect. 13 1
204 179.24 radiation 40.0 90 > th dose independent rect. 11 22
205 179.26 precipitation 0.1 270 > th dose independent rect. 2 1
206 179.26 radiation 40.0 90 > th dose independent rect. 11 4
224 179.26 precipitation 0.1 270 > th dose dependent rect. 2 1
239 179.37 radiation 40.0 90 < th dose independent rect. 15 23
244 179.41 humidity 90.0 30 > th dose independent rect. 5 18
247 179.43 wind 1.0 90 > th dose independent rect. 16 7
264 179.56 radiation 30.0 270 > th dose dependent rect. 11 1
265 179.57 temperature 30.0 90 < th dose independent rect. 11 5
268 179.59 temperature 30.0 270 < th dose independent rect. 11 2
280 179.69 atmosphere 995.0 270 > th dose dependent rect. 11 2
288 179.76 atmosphere 1015.0 90 < th dose independent rect. 16 7
314 179.80 wind 1.0 10 > th dose dependent rect. 22 1
316 179.82 temperature 10.0 90 > th dose dependent rect. 16 19
319 179.85 radiation 10.0 10 < th dose independent rect. 23 7
334 179.95 radiation 30.0 14400 < th dose independent rect. 17 6
336 179.97 temperature 15.0 90 > th dose independent rect. 23 17
338 179.97 temperature 30.0 10 < th dose dependent rect. 22 8
340 180.00 atmosphere 1015.0 90 < th dose independent rect. 16 19
344 180.02 temperature 20.0 90 > th dose independent rect. 16 19
349 180.06 atmosphere 995.0 30 > th dose independent rect. 23 17
358 180.10 atmosphere 995.0 90 > th dose dependent rect. 11 5
364 180.13 temperature 20.0 90 > th dose independent rect. 16 7
367 180.15 wind 9.0 30 < th dose independent rect. 23 17
372 180.17 humidity 50.0 90 > th dose dependent rect. 14 1
374 180.17 temperature 10.0 270 > th dose dependent rect. 16 16
376 180.18 wind 1.0 270 > th dose dependent rect. 11 2
380 180.21 precipitation 0.1 30 < th dose independent rect. 23 17
382 180.21 precipitation 0.1 30 < th dose dependent rect. 23 17
383 180.22 wind 9.0 30 < th dose independent rect. 16 7
384 180.22 temperature 10.0 30 > th dose independent rect. 16 7
388 180.22 radiation 30.0 30 < th dose independent rect. 16 7
392 180.23 temperature 30.0 90 < th dose independent rect. 14 1
401 180.26 precipitation 0.1 10 < th dose independent rect. 16 7
402 180.26 precipitation 0.1 10 < th dose dependent rect. 16 7
409 180.29 wind 3.0 270 > th dose independent rect. 11 2
425 180.32 temperature 10.0 1440 > th dose independent rect. 17 7
428 180.32 radiation 30.0 1440 < th dose independent rect. 17 7
434 180.32 temperature 10.0 1440 > th dose independent rect. 24 17
451 180.39 radiation 1.0 720 < th dose dependent rect. 8 15
456 180.42 atmosphere 995.0 30 > th dose independent rect. 16 7
457 180.42 radiation 1.0 720 < th dose independent rect. 8 15
459 180.42 radiation 30.0 90 > th dose dependent rect. 11 4
467 180.47 radiation 40.0 10 > th dose independent rect. 12 1
475 180.49 radiation 40.0 30 < th dose dependent rect. 16 7
479 180.50 radiation 30.0 90 > th dose dependent rect. 11 21
480 180.51 humidity 90.0 720 > th dose dependent rect. 11 2
497 180.52 humidity 90.0 720 > th dose independent rect. 11 2
499 180.54 temperature 10.0 1440 > th dose independent rect. 24 6
502 180.54 temperature 30.0 1440 < th dose independent rect. 24 6
506 180.54 humidity 50.0 1440 > th dose independent rect. 24 6
515 180.54 atmosphere 995.0 1440 > th dose independent rect. 24 6
516 180.54 radiation 20.0 1440 < th dose independent rect. 24 6
526 180.54 temperature 10.0 1440 > th dose independent rect. 6 18
533 180.56 radiation 40.0 90 < th dose independent sin 17 NA
550 180.57 radiation 40.0 1440 < th dose dependent rect. 24 5
558 180.60 radiation 10.0 10 < th dose dependent rect. 23 18
569 180.63 radiation 40.0 90 > th dose independent sin 17 NA
572 180.64 humidity 90.0 10 > th dose independent rect. 20 2
574 180.65 wind 1.0 270 > th dose independent rect. 8 8
590 180.66 radiation 1.0 720 < th dose dependent rect. 3 20
602 180.69 humidity 90.0 90 > th dose independent rect. 19 3
605 180.70 atmosphere 1015.0 270 < th dose independent rect. 16 16
624 180.73 humidity 90.0 90 > th dose independent rect. 21 1
631 180.73 wind 1.0 90 > th dose independent rect. 16 19
633 180.73 atmosphere 1015.0 10 < th dose dependent rect. 22 1
664 180.78 radiation 40.0 90 < th dose independent rect. 1 22
675 180.79 temperature 10.0 90 > th dose dependent rect. 16 7
680 180.81 humidity 90.0 10 > th dose independent rect. 22 1
693 180.82 humidity 50.0 30 > th dose independent rect. 16 7
694 180.82 radiation 40.0 10 < th dose independent rect. 16 20
695 180.82 atmosphere 1015.0 270 < th dose independent rect. 13 22
696 180.82 humidity 90.0 30 > th dose dependent rect. 5 7
729 180.84 atmosphere 1005.0 270 > th dose independent rect. 11 2
746 180.86 temperature 20.0 90 > th dose independent rect. 11 5
757 180.87 radiation 40.0 90 < th dose independent rect. 16 19
765 180.88 radiation 1.0 720 < th dose independent rect. 3 20
766 180.88 radiation 30.0 10 > th dose dependent rect. 12 1
771 180.89 wind 7.0 90 < th dose independent rect. 16 19
781 180.91 wind 3.0 30 > th dose independent rect. 22 1
782 180.91 atmosphere 1005.0 90 > th dose independent rect. 11 5
785 180.91 radiation 1.0 720 > th dose independent rect. 7 11
787 180.91 temperature 10.0 10 > th dose dependent rect. 16 7
808 180.93 humidity 90.0 30 > th dose dependent rect. 5 1
810 180.93 temperature 30.0 30 < th dose dependent rect. 23 17
816 180.95 wind 9.0 10 < th dose independent rect. 23 7
817 180.95 temperature 10.0 10 > th dose independent rect. 23 7
818 180.95 temperature 30.0 10 < th dose independent rect. 23 7
819 180.95 humidity 50.0 10 > th dose independent rect. 23 7
822 180.95 atmosphere 995.0 10 > th dose independent rect. 23 7
826 180.95 temperature 10.0 10 > th dose independent rect. 6 17
828 180.95 atmosphere 1015.0 10 < th dose independent rect. 6 17
830 180.95 precipitation 0.1 10 < th dose independent rect. 6 17
833 180.95 precipitation 0.1 10 < th dose dependent rect. 6 17
836 180.96 humidity 90.0 270 < th dose independent rect. 11 2
839 180.96 temperature 15.0 270 > th dose independent rect. 8 8
842 180.96 radiation 40.0 90 < th dose independent rect. 3 23
845 180.96 atmosphere 995.0 270 > th dose dependent rect. 9 6
868 180.98 radiation 1.0 720 < th dose independent rect. 8 22
879 180.99 temperature 10.0 270 > th dose dependent rect. 13 22
887 181.00 wind 9.0 10 < th dose independent rect. 6 17
901 181.01 temperature 30.0 30 < th dose dependent rect. 23 5
903 181.01 radiation 40.0 10 < th dose dependent rect. 23 7
905 181.02 atmosphere 995.0 90 > th dose independent rect. 11 5
910 181.03 temperature 20.0 270 > th dose independent rect. 11 2
911 181.03 wind 1.0 90 > th dose independent rect. 11 5
923 181.04 atmosphere 995.0 30 > th dose dependent rect. 23 17
945 181.07 humidity 50.0 30 > th dose dependent rect. 21 19
952 181.09 temperature 15.0 90 > th dose independent rect. 6 15
959 181.09 radiation 1.0 1440 < th dose dependent rect. 11 15
961 181.10 precipitation 0.1 90 < th dose independent rect. 11 5
963 181.10 radiation 20.0 270 < th dose independent rect. 16 17
965 181.10 precipitation 0.1 90 < th dose dependent rect. 11 5
972 181.10 temperature 10.0 30 > th dose dependent rect. 6 17
990 181.12 radiation 40.0 10 < th dose dependent rect. 6 17
997 181.13 precipitation 0.1 30 < th dose independent rect. 23 7
998 181.13 radiation 1.0 1440 < th dose independent rect. 11 15