Os03g0296600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ECA1 protein.
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Os03g0296600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ECA1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.82 | 0.728 | 3.41 | -1.78 | 0.828 | 0.796 | -0.476 | -3.08 | -0.476 | 7.88 | 0.3312 | 8790 | -- | -- |
| 245.45 | 0.73 | 3.36 | -1.49 | 0.817 | 1.3 | -0.566 | -- | -0.423 | 8.1 | 0.1738 | 11665 | -- | -- |
| 239.73 | 0.721 | 3.41 | -1.76 | 0.822 | 0.833 | -- | -3.3 | -0.466 | 7.72 | 0.27 | 8873 | -- | -- |
| 245.8 | 0.73 | 3.35 | -1.38 | 0.817 | 1.28 | -- | -- | -0.404 | 8.19 | 0.18 | 10120 | -- | -- |
| 277.36 | 0.776 | 3.43 | -1.77 | -- | 0.856 | -- | -3.22 | -0.456 | -- | 0.28 | 8820 | -- | -- |
| 272.75 | 0.774 | 3.3 | -0.884 | 0.838 | -- | -0.677 | -- | -0.173 | 8.24 | -- | -- | -- | -- |
| 274.12 | 0.775 | 3.3 | -0.905 | 0.841 | -- | -- | -- | -0.174 | 8.12 | -- | -- | -- | -- |
| 282.46 | 0.783 | 3.37 | -1.37 | -- | 1.37 | -- | -- | -0.4 | -- | 0.2105 | 10213 | -- | -- |
| 285.33 | 0.787 | 3.3 | -- | 0.819 | 0.926 | -- | -- | -0.238 | 7.84 | 0.99 | 8826 | -- | -- |
| 313 | 0.827 | 3.32 | -0.898 | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
| 295.71 | 0.804 | 3.27 | -- | 0.836 | -- | -- | -- | -0.0727 | 8.19 | -- | -- | -- | -- |
| 317.97 | 0.833 | 3.3 | -- | -- | 0.383 | -- | -- | -0.0595 | -- | 0.2105 | 10213 | -- | -- |
| 334.27 | 0.853 | 3.3 | -- | -- | -- | -- | -- | -0.0637 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 7 | 229.36 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 14 | 229.99 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 38 | 231.24 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 40 | 231.32 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 44 | 231.39 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 50 | 231.55 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 51 | 231.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 92 | 232.46 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 108 | 232.78 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 122 | 233.02 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 133 | 233.26 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 139 | 233.32 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 146 | 233.43 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 174 | 233.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 179 | 233.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 193 | 234.00 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 195 | 234.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 324 | 234.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 340 | 234.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 359 | 234.99 | wind | 5 | 14400 | < th | dose independent | sin | 22 | NA |
| 396 | 235.21 | wind | 5 | 14400 | > th | dose independent | sin | 22 | NA |
| 529 | 235.70 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 542 | 235.77 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 556 | 235.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 570 | 235.89 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 572 | 235.90 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 575 | 235.91 | wind | 7 | 43200 | < th | dose dependent | sin | 20 | NA |
| 592 | 235.96 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 611 | 236.02 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 614 | 236.03 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 615 | 236.03 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 625 | 236.04 | wind | 1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 646 | 236.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 666 | 236.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 691 | 236.19 | wind | 3 | 14400 | > th | dose dependent | sin | 23 | NA |
| 763 | 236.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 767 | 236.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 784 | 236.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 892 | 236.63 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |