BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0296600 Os03g0296600|AK109176
(151 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76750.1 | chr1:28811107-28811583 FORWARD LENGTH=159 103 4e-23
AT4G39340.1 | chr4:18293129-18293512 REVERSE LENGTH=128 92 1e-19
AT2G21750.1 | chr2:9283367-9283744 REVERSE LENGTH=126 91 3e-19
AT2G21740.1 | chr2:9281986-9282363 REVERSE LENGTH=126 84 3e-17
AT5G64720.1 | chr5:25872346-25872813 REVERSE LENGTH=156 58 2e-09
>AT1G76750.1 | chr1:28811107-28811583 FORWARD LENGTH=159
Length = 158
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 47 CWEVLMEIKSCTGEILLFFINGEAYLGPGCCRAIRVIEQSCWATDAMLSVIGFTPEEGDM 106
CW+ LM+++ C+GE++LFF+NGE Y+GPGCC AIR I + CW T M+ V+GFT +EGDM
Sbjct: 57 CWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWPT--MIGVLGFTAQEGDM 114
Query: 107 LKGYCDAGDEHK 118
L+GYCD D
Sbjct: 115 LQGYCDGNDSDN 126
>AT4G39340.1 | chr4:18293129-18293512 REVERSE LENGTH=128
Length = 127
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 46 QCWEVLMEIKSCTGEILLFFINGEAYLGPGCCRAIRVIEQSCWATDAMLSVIGFTPEEGD 105
+CW L E+KSCT EI+LFF+NGE LG CC ++ +I +CW AML+ +GFTPEE +
Sbjct: 47 ECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWP--AMLTSLGFTPEEAN 104
Query: 106 MLKGYCDAGDEHKPSPPPA 124
+L+G+C + SP P+
Sbjct: 105 VLRGFCQNPNSGDSSPAPS 123
>AT2G21750.1 | chr2:9283367-9283744 REVERSE LENGTH=126
Length = 125
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 40 VGQQQQQCWEVLMEIKSCTGEILLFFINGEAYLGPGCCRAIRVIEQSCWATDAMLSVIGF 99
G QCW+ L E+KSCT EI+LFF+NGE LG GCC A+ VI CW AML+ +GF
Sbjct: 39 TGGGLMQCWDALYELKSCTNEIVLFFLNGETKLGYGCCNAVDVITTDCWP--AMLTSLGF 96
Query: 100 TPEEGDMLKGYCDAGDEHKPSP 121
T EE ++L+G+C + + SP
Sbjct: 97 TLEETNVLRGFCQSPNSGGSSP 118
>AT2G21740.1 | chr2:9281986-9282363 REVERSE LENGTH=126
Length = 125
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 45 QQCWEVLMEIKSCTGEILLFFINGEAYLGPGCCRAIRVIEQSCWATDAMLSVIGFTPEEG 104
+CW L E+KSCT EI+LFF+NGE LG CC+A+ VI CW AML+ +GFT +E
Sbjct: 44 MECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWP--AMLTSLGFTSDET 101
Query: 105 DMLKGYCDA 113
++L+G+C +
Sbjct: 102 NVLRGFCQS 110
>AT5G64720.1 | chr5:25872346-25872813 REVERSE LENGTH=156
Length = 155
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 46 QCWEVLMEIKSCTGEILLFFINGEAYLGP--------GCCRAIRVIEQSCWATDAMLSVI 97
CW +E+KSCT EI+ FF++ P CC AI ++ + CW+ M + +
Sbjct: 52 DCWNAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCCGAIGLVVKDCWS--VMFTSL 109
Query: 98 GFTPEEGDMLKGYCD---AGDEHKPSPPPASPAVGYVAV 133
G T EG+ L+ YC+ E PSP P + A+ V +
Sbjct: 110 GLTTMEGNNLREYCEFQAEKSELSPSPAPETLALSPVEI 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,087,656
Number of extensions: 122865
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 5
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)