BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0162200 Os11g0162200|AK060396
         (69 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0162200  Similar to Ubiquinol-cytochrome c reductase co...   140   3e-34
Os02g0541700  Similar to Ubiquinol-cytochrome c reductase co...    97   2e-21

>Os11g0162200 Similar to Ubiquinol-cytochrome c reductase complex 7.8 kDa
          protein (EC 1.10.2.2) (Mitochondrial hinge protein)
          (CR7)
          Length = 69

 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV 60
          MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV
Sbjct: 1  MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV 60

Query: 61 APKLLEKLK 69
          APKLLEKLK
Sbjct: 61 APKLLEKLK 69



>Os02g0541700 Similar to Ubiquinol-cytochrome c reductase complex 7.8 kDa
          protein (EC 1.10.2.2) (Mitochondrial hinge protein)
          (CR7)
          Length = 69

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 53/69 (76%)

Query: 1  MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV 60
          M+DEE  DPK  LE+R K +CV   YEY+KCVKR+E D+TG KHCTGQYFDYW C+DK V
Sbjct: 1  MSDEEVSDPKALLEDRSKAKCVYQWYEYQKCVKRIEDDETGQKHCTGQYFDYWKCVDKNV 60

Query: 61 APKLLEKLK 69
          A KL + LK
Sbjct: 61 AEKLFDSLK 69



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.138    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,891,521
Number of extensions: 103315
Number of successful extensions: 153
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)