BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0159000 Os11g0159000|AK065738
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0159000 Conserved hypothetical protein 516 e-147
Os05g0583500 PX-associated domain containing protein 180 8e-46
>Os11g0159000 Conserved hypothetical protein
Length = 252
Score = 516 bits (1328), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MRRAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFK 60
MRRAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFK
Sbjct: 1 MRRAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFK 60
Query: 61 VEFHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENI 120
VEFHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENI
Sbjct: 61 VEFHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENI 120
Query: 121 LRDFVVDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLD 180
LRDFVVDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLD
Sbjct: 121 LRDFVVDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLD 180
Query: 181 IFRKNQSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMAL 240
IFRKNQSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMAL
Sbjct: 181 IFRKNQSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMAL 240
Query: 241 VLRPQDAQIWFK 252
VLRPQDAQIWFK
Sbjct: 241 VLRPQDAQIWFK 252
>Os05g0583500 PX-associated domain containing protein
Length = 1136
Score = 180 bits (457), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 146/246 (59%), Gaps = 3/246 (1%)
Query: 8 VDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFKVEFHWRG 67
V DL EE K R V + F +++ ++ TS S+W N+P + ++ RY+S +F +
Sbjct: 13 VRDLAEEGKKRAVLLLVFAFGLAFLMSLTSSSVWINLPFATALIVLFRYISLDYDFRRKS 72
Query: 68 QPVQKQTHLSQLSKRQLSAHDHRLSTVAP--VSRWRRKVGSPSVEAAFESFIENILRDFV 125
L+K + S +++ ++ S W+ KV SP VEAA E F +++ ++V
Sbjct: 73 TTTTDNDASRALTKTK-SIEPNKIPSIQKDGKSDWKSKVNSPPVEAAIEQFTRHLVTEWV 131
Query: 126 VDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLDIFRKN 185
DLWYS +TPD+E PE + ++ + LGEIS R + +NL+ LLTRD+ DLI +L+++
Sbjct: 132 TDLWYSRVTPDKEGPEELINIVNNVLGEISVRARNVNLIALLTRDLIDLICKNLELYHLC 191
Query: 186 QSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMALVLRPQ 245
Q++IG + LS+E RD LK LI +LHPAL S+ E+K+ Q + G++++ +PQ
Sbjct: 192 QAKIGKEKFVNLSTERRDAELKLTLITENKLHPALFSASAEHKILQSLADGLISVTAKPQ 251
Query: 246 DAQIWF 251
D Q +F
Sbjct: 252 DLQCYF 257
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,102,082
Number of extensions: 310540
Number of successful extensions: 1081
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1080
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)