Os05g0583500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PX-associated domain containing protein.
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Os05g0583500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PX-associated domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.7 | 0.174 | 9.54 | 0.505 | 0.514 | -0.154 | -0.17 | 0.786 | 0.229 | 12.6 | 20.51 | 2529 | -- | -- |
| 14.49 | 0.177 | 9.56 | 0.436 | 0.505 | -0.353 | -0.258 | -- | 0.221 | 12.7 | 18.9 | 5066 | -- | -- |
| 13.82 | 0.173 | 9.54 | 0.506 | 0.514 | -0.155 | -- | 0.826 | 0.23 | 12.6 | 20.52 | 2505 | -- | -- |
| 14.21 | 0.176 | 9.56 | 0.552 | 0.517 | -0.419 | -- | -- | 0.216 | 12.5 | 15.92 | 24234 | -- | -- |
| 30.29 | 0.256 | 9.54 | 0.489 | -- | -0.19 | -- | 0.921 | 0.237 | -- | 20.4 | 2451 | -- | -- |
| 16.4 | 0.19 | 9.59 | 0.216 | 0.53 | -- | -0.262 | -- | 0.125 | 12.7 | -- | -- | -- | -- |
| 16.69 | 0.191 | 9.59 | 0.206 | 0.531 | -- | -- | -- | 0.123 | 12.6 | -- | -- | -- | -- |
| 30.79 | 0.258 | 9.57 | 0.377 | -- | -0.413 | -- | -- | 0.212 | -- | 19.4 | 2388 | -- | -- |
| 17.47 | 0.195 | 9.59 | -- | 0.527 | -0.103 | -- | -- | 0.11 | 12.6 | 7.3 | 47520 | -- | -- |
| 34.33 | 0.274 | 9.6 | 0.187 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 17.8 | 0.197 | 9.59 | -- | 0.528 | -- | -- | -- | 0.1 | 12.6 | -- | -- | -- | -- |
| 33.94 | 0.271 | 9.59 | -- | -- | -0.22 | -- | -- | 0.135 | -- | 20.2 | 2385 | -- | -- |
| 35.25 | 0.277 | 9.6 | -- | -- | -- | -- | -- | 0.0931 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.13 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 5 |
| 6 | 13.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 7 | 13.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 9 | 13.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 15 | 13.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 16 | 13.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 23 | 13.36 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 34 | 13.37 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 38 | 13.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 39 | 13.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 40 | 13.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 42 | 13.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 47 | 13.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 72 | 13.38 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 88 | 13.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 105 | 13.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 106 | 13.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 135 | 13.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 138 | 13.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 158 | 13.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 11 |
| 169 | 13.44 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 178 | 13.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 189 | 13.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 191 | 13.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 222 | 13.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 223 | 13.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 225 | 13.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 229 | 13.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 258 | 13.46 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 299 | 13.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 301 | 13.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 322 | 13.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 341 | 13.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 372 | 13.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 399 | 13.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 438 | 13.49 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 457 | 13.50 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 506 | 13.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 508 | 13.51 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 532 | 13.51 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 542 | 13.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 17 |
| 583 | 13.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 601 | 13.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 616 | 13.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 631 | 13.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 687 | 13.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 703 | 13.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 766 | 13.58 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 798 | 13.59 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 799 | 13.59 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 800 | 13.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 802 | 13.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 818 | 13.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 825 | 13.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 966 | 13.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 2 |