BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0152900 Os11g0152900|AK109321
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0152900  Conserved hypothetical protein                      170   2e-43
Os12g0153200  Conserved hypothetical protein                       73   6e-14

>Os11g0152900 Conserved hypothetical protein
          Length = 121

 Score =  170 bits (430), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/121 (75%), Positives = 91/121 (75%)

Query: 1   MGNCLVIQDDRDKEIKIMGMDGGEILKLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGNCLVIQDDRDKEIKIMGMDGGEILKLHR                              
Sbjct: 1   MGNCLVIQDDRDKEIKIMGMDGGEILKLHRDAAVSDSDDPAADMAKAAAAAAAAAAADTA 60

Query: 61  GGVVRVKLVISKQQLKKMLHKDGVSLDDMVSLMQREASEQEMISCRGWRPALKSIPEGSD 120
           GGVVRVKLVISKQQLKKMLHKDGVSLDDMVSLMQREASEQEMISCRGWRPALKSIPEGSD
Sbjct: 61  GGVVRVKLVISKQQLKKMLHKDGVSLDDMVSLMQREASEQEMISCRGWRPALKSIPEGSD 120

Query: 121 C 121
           C
Sbjct: 121 C 121



>Os12g0153200 Conserved hypothetical protein
          Length = 129

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 74/128 (57%), Gaps = 10/128 (7%)

Query: 1   MGNCLVIQDDRDKEIKIMGMD-GGEILKLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 59
           MGNC+VIQ DR++EIKIM MD  GEILKL                               
Sbjct: 1   MGNCMVIQ-DRNREIKIMSMDVDGEILKLPPPPPPLNGVSSDDDDEALRPATADMADDPP 59

Query: 60  XGGVVRVKLVISKQQLKKM-LHKD--GVSLDDMVSLMQREASEQEMI----SCRG-WRPA 111
            G VVRVKLV+ KQ+LKKM LH D   +SL+DMVSLMQ++A   E++    SC   W+P 
Sbjct: 60  GGAVVRVKLVVRKQELKKMLLHNDAAAISLNDMVSLMQKQAEADELLHQQESCGSVWQPT 119

Query: 112 LKSIPEGS 119
           L+SIPEGS
Sbjct: 120 LQSIPEGS 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,960,545
Number of extensions: 68955
Number of successful extensions: 196
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)