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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0152900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0304) R2 : 0.137
β1 : 0.0474 (0.113) R2dD : 0.000356 R2D : 0.00225
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.21 (0.223) R2dE : 0.0584 R2E : 0.0281
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.7 (1.61) R2dD*E : 0.107 R2D*E : 0.0782
γ1 : 0.00878 (0.0651) R2dN8 : 4.63e-05 R2N8 : -0.000374
σ : 0.572
deviance : 149.37
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.75
memory length : 29
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.07
open length of G : 0.975

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.59 0.563 3.26 0.0673 0.309 1.36 0.577 -11.5 0.0159 19 24.77 30 7.02 1.04
160.01 0.594 3.26 0.192 0.308 1.05 0.836 -- 0.00926 19 25.47 18 7.26 1.45
144.45 0.564 3.26 0.0533 0.31 1.36 -- -11.8 0.0172 19.1 24.75 29 7.07 0.975
161.83 0.596 3.25 0.175 0.31 1.04 -- -- 0.0109 19.1 25.05 28 7.08 1.39
149.37 0.572 3.25 0.0474 -- 1.21 -- -11.7 0.00878 -- 24.75 29 7.07 0.975
167.31 0.606 3.26 0.19 0.244 -- 0.816 -- -0.0123 18.8 -- -- -- --
169.02 0.609 3.26 0.175 0.246 -- -- -- -0.0103 18.9 -- -- -- --
166.73 0.604 3.25 0.17 -- 0.893 -- -- 0.00253 -- 25.15 27 7.16 1.36
162.64 0.597 3.26 -- 0.308 1.04 -- -- -0.0086 19.1 25.04 24 7.12 1.43
172.21 0.613 3.25 0.17 -- -- -- -- -0.0149 -- -- -- -- --
169.83 0.61 3.26 -- 0.244 -- -- -- -0.0298 19 -- -- -- --
167.49 0.605 3.25 -- -- 0.894 -- -- -0.0163 -- 25.07 25 7.19 1.34
172.97 0.614 3.26 -- -- -- -- -- -0.0338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.71 temperature 25.0 30 > th dose independent rect. 7 1
3 150.98 humidity 80.0 10 < th dose independent rect. 7 1
11 151.93 radiation 10.0 30 > th dose independent rect. 7 1
14 152.83 temperature 25.0 10 > th dose dependent rect. 7 1
44 156.25 temperature 30.0 720 < th dose independent rect. 3 8
60 157.90 wind 3.0 10 < th dose dependent rect. 7 1
61 158.24 atmosphere 1000.0 30 > th dose independent rect. 23 23
63 158.68 humidity 50.0 30 > th dose independent rect. 23 23
64 158.80 wind 5.0 30 < th dose dependent rect. 22 1
65 158.80 atmosphere 1005.0 10 > th dose dependent rect. 22 1
68 158.82 wind 1.0 30 > th dose independent rect. 22 1
69 158.82 humidity 80.0 30 > th dose independent rect. 22 1
71 158.83 wind 5.0 30 < th dose independent rect. 22 1
73 158.84 atmosphere 1005.0 30 > th dose independent rect. 22 1
74 158.84 atmosphere 995.0 30 > th dose dependent rect. 22 1
78 158.86 wind 9.0 1440 < th dose independent rect. 23 1
79 158.86 temperature 10.0 30 > th dose independent rect. 22 1
81 158.86 temperature 10.0 1440 > th dose independent rect. 23 1
84 158.86 temperature 30.0 30 < th dose independent rect. 22 1
85 158.86 temperature 30.0 1440 < th dose independent rect. 23 1
89 158.86 humidity 50.0 30 > th dose independent rect. 22 1
92 158.86 humidity 50.0 1440 > th dose independent rect. 23 1
102 158.86 atmosphere 1005.0 30 > th dose independent rect. 7 1
103 158.86 atmosphere 995.0 30 > th dose independent rect. 22 1
104 158.86 atmosphere 995.0 1440 > th dose independent rect. 23 1
105 158.86 atmosphere 1010.0 30 < th dose independent rect. 22 1
107 158.86 radiation 1.0 30 < th dose independent rect. 22 1
112 158.86 radiation 1.0 1440 < th dose independent rect. 23 1
132 158.86 temperature 10.0 30 > th dose independent rect. 23 23
133 158.86 temperature 10.0 1440 > th dose independent rect. 24 23
136 158.86 humidity 50.0 30 > th dose dependent rect. 22 1
139 158.86 radiation 1.0 30 < th dose dependent rect. 22 1
144 158.86 radiation 1.0 1440 < th dose dependent rect. 23 1
154 158.88 temperature 10.0 30 > th dose dependent rect. 22 1
157 158.89 temperature 25.0 30 > th dose dependent rect. 22 1
158 158.90 temperature 25.0 30 > th dose independent rect. 22 1
159 158.90 humidity 90.0 30 < th dose independent rect. 22 1
161 158.92 precipitation 0.1 30 < th dose independent rect. 22 1
163 158.92 temperature 30.0 30 < th dose dependent rect. 22 1
165 158.92 precipitation 0.1 30 < th dose dependent rect. 22 1
167 158.93 atmosphere 1015.0 30 < th dose dependent rect. 22 1
169 158.97 temperature 30.0 30 < th dose independent rect. 23 23
178 159.02 humidity 90.0 30 < th dose dependent rect. 22 1
192 159.15 wind 1.0 30 > th dose dependent rect. 22 1
224 159.27 wind 7.0 4320 > th dose independent rect. 1 1
229 159.27 wind 7.0 4320 > th dose dependent rect. 1 1
242 159.53 precipitation 0.1 30 < th dose independent rect. 23 23
244 159.53 precipitation 0.1 30 < th dose dependent rect. 23 23
246 159.65 wind 3.0 10 < th dose independent rect. 7 1
251 159.69 temperature 10.0 720 > th dose independent rect. 15 8
252 159.69 temperature 10.0 720 > th dose independent rect. 23 16
254 159.74 radiation 20.0 10 < th dose independent rect. 7 1
256 159.76 temperature 30.0 30 < th dose independent rect. 8 23
257 159.76 wind 1.0 720 < th dose dependent rect. 2 2
261 159.93 temperature 25.0 30 > th dose independent rect. 22 10
262 159.95 temperature 10.0 720 > th dose independent rect. 3 8
263 159.95 atmosphere 995.0 720 > th dose independent rect. 3 8
264 159.95 temperature 10.0 720 > th dose independent rect. 11 16
270 160.08 wind 1.0 1440 > th dose independent rect. 2 1
273 160.23 wind 9.0 30 < th dose independent rect. 23 23
279 160.30 wind 9.0 720 < th dose independent rect. 3 8
280 160.35 wind 1.0 1440 < th dose independent rect. 2 1
282 160.44 precipitation 0.1 1440 < th dose independent rect. 23 1
284 160.44 precipitation 0.1 1440 < th dose dependent rect. 23 1
288 160.48 atmosphere 995.0 720 > th dose independent rect. 23 16
289 160.51 atmosphere 1000.0 10 < th dose dependent rect. 10 2
290 160.53 humidity 50.0 720 > th dose independent rect. 3 8
295 160.63 radiation 40.0 720 < th dose independent rect. 15 8
297 160.63 atmosphere 1000.0 90 < th dose dependent rect. 10 1
300 160.71 temperature 30.0 720 < th dose independent rect. 18 17
304 160.75 temperature 30.0 270 > th dose dependent rect. 17 18
312 160.77 atmosphere 1000.0 10 < th dose independent rect. 10 2
316 160.84 temperature 30.0 270 > th dose dependent rect. 16 20
318 160.86 wind 9.0 4320 > th dose independent rect. 19 1
319 160.86 atmosphere 1000.0 90 < th dose independent rect. 10 1
320 160.86 wind 9.0 4320 > th dose dependent rect. 19 1
322 160.87 temperature 30.0 720 < th dose independent rect. 23 16
323 160.89 temperature 30.0 720 < th dose independent rect. 8 7
329 160.97 wind 9.0 720 < th dose independent rect. 15 8
340 161.04 atmosphere 1015.0 720 < th dose independent rect. 3 8
341 161.06 temperature 30.0 270 > th dose dependent sin 10 NA
353 161.26 wind 1.0 720 < th dose dependent rect. 22 1
367 161.34 temperature 30.0 270 > th dose independent rect. 16 20
369 161.36 wind 1.0 30 > th dose independent rect. 23 23
372 161.39 humidity 80.0 720 < th dose independent rect. 7 1
387 161.61 temperature 30.0 720 < th dose independent rect. 9 2
389 161.64 humidity 50.0 30 > th dose independent rect. 8 23
394 161.67 temperature 25.0 10 > th dose dependent rect. 22 10
395 161.68 temperature 30.0 270 > th dose independent sin 10 NA
400 161.71 humidity 90.0 10 < th dose dependent rect. 7 1
411 161.76 atmosphere 1000.0 30 > th dose independent rect. 8 23
423 161.84 wind 1.0 30 > th dose independent rect. 7 1
426 161.84 temperature 30.0 270 < th dose independent rect. 20 23
427 161.85 wind 1.0 720 > th dose independent rect. 23 7
428 161.85 temperature 30.0 720 < th dose independent rect. 23 12
429 161.85 temperature 25.0 30 > th dose independent rect. 16 16
437 161.89 wind 1.0 10 < th dose dependent rect. 12 2
440 161.90 temperature 20.0 90 > th dose dependent rect. 16 7
443 161.92 wind 1.0 720 > th dose independent rect. 18 17
459 161.94 radiation 40.0 10 < th dose independent rect. 7 1
461 161.94 temperature 20.0 30 > th dose dependent rect. 16 16
468 161.97 temperature 30.0 720 > th dose independent rect. 9 2
472 161.97 wind 1.0 10 < th dose dependent rect. 11 7
484 161.99 wind 1.0 30 > th dose independent rect. 8 23
486 162.00 temperature 30.0 720 > th dose dependent rect. 9 2
490 162.02 wind 1.0 10 < th dose dependent rect. 11 5
500 162.05 humidity 70.0 30 > th dose independent rect. 7 1
505 162.06 temperature 25.0 90 > th dose independent rect. 16 7
515 162.10 precipitation 0.1 10 < th dose independent rect. 8 23
516 162.10 precipitation 0.1 10 < th dose dependent rect. 8 23
544 162.17 wind 1.0 720 > th dose independent rect. 18 12
545 162.18 temperature 30.0 270 < th dose independent sin 10 NA
546 162.18 wind 1.0 720 < th dose independent rect. 22 1
567 162.21 precipitation 0.1 30 < th dose independent rect. 7 1
570 162.21 precipitation 0.1 30 < th dose dependent rect. 7 1
572 162.21 wind 1.0 720 < th dose dependent rect. 18 6
578 162.22 wind 9.0 1440 < th dose independent rect. 8 1
581 162.22 temperature 10.0 30 > th dose independent rect. 7 1
583 162.22 temperature 10.0 1440 > th dose independent rect. 8 1
588 162.22 temperature 30.0 30 < th dose independent rect. 7 1
590 162.22 humidity 50.0 30 > th dose independent rect. 7 1
592 162.22 humidity 50.0 1440 > th dose independent rect. 8 1
594 162.22 atmosphere 995.0 30 > th dose independent rect. 7 1
595 162.22 atmosphere 995.0 1440 > th dose independent rect. 8 1
598 162.22 atmosphere 1010.0 30 < th dose independent rect. 7 1
600 162.22 atmosphere 1015.0 1440 < th dose independent rect. 8 1
603 162.22 temperature 10.0 30 > th dose independent rect. 8 23
604 162.22 temperature 10.0 1440 > th dose independent rect. 9 23
611 162.23 temperature 20.0 90 > th dose dependent rect. 16 11
649 162.31 temperature 20.0 10 > th dose dependent rect. 16 11
695 162.41 atmosphere 995.0 30 > th dose dependent rect. 7 1
713 162.43 temperature 30.0 270 < th dose independent rect. 8 11
715 162.43 humidity 90.0 30 < th dose dependent rect. 17 15
716 162.44 wind 1.0 720 < th dose independent rect. 13 15
733 162.49 wind 9.0 30 < th dose independent rect. 8 23
736 162.50 temperature 30.0 270 > th dose independent rect. 9 10
754 162.50 temperature 30.0 270 < th dose independent rect. 23 23
756 162.50 wind 1.0 720 < th dose dependent rect. 2 22
761 162.52 temperature 30.0 270 > th dose independent no NA NA
762 162.52 wind 1.0 720 < th dose independent rect. 21 7
763 162.52 wind 1.0 720 < th dose independent rect. 18 10
864 162.54 temperature 30.0 270 < th dose independent rect. 9 13
868 162.55 wind 1.0 10 < th dose independent rect. 12 2
871 162.55 temperature 15.0 30 > th dose dependent rect. 7 16
887 162.59 humidity 80.0 10 < th dose independent rect. 20 12
890 162.59 temperature 30.0 270 < th dose independent rect. 16 23
894 162.60 atmosphere 1000.0 270 < th dose independent rect. 7 5
903 162.62 temperature 30.0 30 < th dose independent rect. 3 23
905 162.63 temperature 30.0 270 < th dose independent no NA NA
907 162.63 precipitation 0.1 720 < th dose independent rect. 3 8
910 162.63 precipitation 0.1 720 < th dose dependent rect. 3 8
913 162.64 wind 9.0 720 < th dose independent rect. 11 16
923 162.65 atmosphere 1000.0 10 < th dose dependent rect. 8 5
944 162.68 temperature 20.0 10 > th dose dependent sin 15 NA