Os12g0153200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0153200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 485.32 | 1.04 | 6.95 | 4.52 | 3.12 | -4.83 | -0.993 | 4.28 | 1.07 | 23.7 | 18.91 | 4526 | 20.5 | 3.52 |
| 500.15 | 1.04 | 7.1 | 4.15 | 3.05 | -5.3 | -0.588 | -- | 0.913 | 23.7 | 16.61 | 4463 | 20.3 | 3.92 |
| 487.98 | 1.03 | 6.98 | 4.37 | 3.24 | -4.92 | -- | 3.29 | 1.02 | 23.8 | 18.7 | 4603 | 20.5 | 2.56 |
| 498.08 | 1.04 | 7.03 | 3.9 | 3.53 | -5.23 | -- | -- | 0.87 | 23.7 | 17.6 | 4623 | 20.5 | 2.2 |
| 905.47 | 1.4 | 6.79 | 4.99 | -- | -4.18 | -- | 3.29 | 1.36 | -- | 17.55 | 6809 | 23 | 0.8 |
| 971.52 | 1.46 | 7.35 | 1.52 | 2.59 | -- | -1.32 | -- | -0.347 | 23.3 | -- | -- | -- | -- |
| 978.91 | 1.47 | 7.34 | 1.57 | 2.6 | -- | -- | -- | -0.343 | 23.3 | -- | -- | -- | -- |
| 566.39 | 1.11 | 7.08 | 3.64 | -- | -6.65 | -- | -- | 0.701 | -- | -22.84 | 6223 | 1.57 | 11.3 |
| 710.64 | 1.24 | 7.25 | -- | 3.26 | -3.24 | -- | -- | 0.253 | 23.6 | 21.6 | 3232 | 21.2 | 0.0024 |
| 1401.07 | 1.75 | 7.28 | 1.64 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 1043.93 | 1.51 | 7.38 | -- | 2.61 | -- | -- | -- | -0.518 | 23.3 | -- | -- | -- | -- |
| 832.84 | 1.34 | 7.22 | -- | -- | -4.48 | -- | -- | 0.0541 | -- | -18.11 | 6426 | 5.2 | 1.68 |
| 1471.7 | 1.79 | 7.32 | -- | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 496.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 12 | 500.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 8 |
| 30 | 502.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 69 | 507.97 | temperature | 20 | 4320 | > th | dose dependent | sin | 11 | NA |
| 72 | 508.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 102 | 511.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 156 | 515.24 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 269 | 520.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 298 | 521.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 324 | 522.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 386 | 523.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 415 | 524.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 432 | 524.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 463 | 525.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 505 | 526.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 523 | 526.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 525 | 526.42 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 545 | 526.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 546 | 526.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 548 | 526.68 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 550 | 526.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 564 | 526.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 596 | 527.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 626 | 527.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 645 | 527.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 670 | 528.20 | temperature | 25 | 4320 | < th | dose independent | sin | 16 | NA |
| 694 | 528.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 698 | 528.47 | temperature | 25 | 4320 | > th | dose independent | sin | 16 | NA |
| 710 | 528.65 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 725 | 528.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 921 | 531.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 11 |