BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0149200 Os11g0149200|J075095O03
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0149200  Conserved hypothetical protein                      228   1e-60
Os12g0147200  Conserved hypothetical protein                      132   1e-31

>Os11g0149200 Conserved hypothetical protein
          Length = 146

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 119/146 (81%)

Query: 1   MAYMRVTHRDEEGKKVTEKVPIPETRRPDTARHFERKLEEQGFHRLERHXXXXXXXXXXX 60
           MAYMRVTHRDEEGKKVTEKVPIPETRRPDTARHFERKLEEQGFHRLERH           
Sbjct: 1   MAYMRVTHRDEEGKKVTEKVPIPETRRPDTARHFERKLEEQGFHRLERHPANGPARAGIG 60

Query: 61  XXXXKSGRGGKFTWEGPDGPVDAQLQXXXXXXXXXXXXYDEGDGAGVDEEVAKEVVIGEV 120
               KSGRGGKFTWEGPDGPVDAQLQ            YDEGDGAGVDEEVAKEVVIGEV
Sbjct: 61  APPPKSGRGGKFTWEGPDGPVDAQLQPAPPAVDPNDPNYDEGDGAGVDEEVAKEVVIGEV 120

Query: 121 EVAKVAEARDGVDVVAPAPLLQQEQQ 146
           EVAKVAEARDGVDVVAPAPLLQQEQQ
Sbjct: 121 EVAKVAEARDGVDVVAPAPLLQQEQQ 146



>Os12g0147200 Conserved hypothetical protein
          Length = 147

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 93/149 (62%), Gaps = 10/149 (6%)

Query: 1   MAYMRVTHRDEEGKKVTEKVPIPETRRPDTARHFERKLEEQGFHRLERHXXXXXXXXXXX 60
           M YMR THRDEEGKKVTEKV +PETR PDTARHFERKL++QG HR+ERH           
Sbjct: 1   MMYMRATHRDEEGKKVTEKVAVPETRHPDTARHFERKLDQQGLHRMERH--PANGSRGIG 58

Query: 61  XXXXKSGRGGKFTWEGPDGPVDAQLQXXXXXXXXXXXXYDEGDGAGVDEEVAKEVVIGEV 120
               KSGRGGKFTWEGPD  VD+QL             Y+        +   +  V+GEV
Sbjct: 59  APPPKSGRGGKFTWEGPDSIVDSQLDPLPAAIDRNDPNYE----EEEGDHEREADVVGEV 114

Query: 121 EVAKVA-EARDG---VDVVAPAPLLQQEQ 145
           EVAKVA +ARDG   VDVVAP  L ++ Q
Sbjct: 115 EVAKVAGDARDGVARVDVVAPPQLHEKLQ 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,791,093
Number of extensions: 182410
Number of successful extensions: 369
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 151 (62.8 bits)