BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0147100 Os11g0147100|AK073054
         (246 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0147100  Conserved hypothetical protein                      509   e-145
Os12g0144000  Hypothetical protein                                166   2e-41

>Os11g0147100 Conserved hypothetical protein
          Length = 246

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MASADLLRREEEFYASLFDSAKGGDAVKSRGQMIERKIEVLEDMAAKVSNRRSRRWLNDR 60
           MASADLLRREEEFYASLFDSAKGGDAVKSRGQMIERKIEVLEDMAAKVSNRRSRRWLNDR
Sbjct: 1   MASADLLRREEEFYASLFDSAKGGDAVKSRGQMIERKIEVLEDMAAKVSNRRSRRWLNDR 60

Query: 61  LLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSVGEWDAFRSIDMDVEARLVQQMKQ 120
           LLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSVGEWDAFRSIDMDVEARLVQQMKQ
Sbjct: 61  LLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSVGEWDAFRSIDMDVEARLVQQMKQ 120

Query: 121 SSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIYEERVRTFIEDTSGKDML 180
           SSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIYEERVRTFIEDTSGKDML
Sbjct: 121 SSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIYEERVRTFIEDTSGKDML 180

Query: 181 VLNVQDPFQRLLLHGVCEFYNVSSTTTTTVRDGKLCKTTAIKKRSGTGAPSRITLVSFLR 240
           VLNVQDPFQRLLLHGVCEFYNVSSTTTTTVRDGKLCKTTAIKKRSGTGAPSRITLVSFLR
Sbjct: 181 VLNVQDPFQRLLLHGVCEFYNVSSTTTTTVRDGKLCKTTAIKKRSGTGAPSRITLVSFLR 240

Query: 241 MKKKSH 246
           MKKKSH
Sbjct: 241 MKKKSH 246



>Os12g0144000 Hypothetical protein
          Length = 110

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/96 (86%), Positives = 85/96 (88%), Gaps = 4/96 (4%)

Query: 4  ADLLRREEEFYASLFDSAKGGDAVKSRGQMIERKIEVLEDMAAKVSNRRSRRWLNDRLLI 63
          ADLLRREEEFYASLFDS KGGDAVKSRGQMIERKIEVLEDMA KVSNRRSRRWLNDRLLI
Sbjct: 2  ADLLRREEEFYASLFDSPKGGDAVKSRGQMIERKIEVLEDMATKVSNRRSRRWLNDRLLI 61

Query: 64 ELVPRLHVEEIKGLFAPPPWGEELPVSAF----CRT 95
          ELVPRLHVEEIKGLFAPPPWG+    S F    CR+
Sbjct: 62 ELVPRLHVEEIKGLFAPPPWGKLQCCSHFLTPYCRS 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,140,795
Number of extensions: 318021
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)