BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0140900 Os11g0140900|Os11g0140900
         (274 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0140900  Hypothetical protein                                488   e-138
Os12g0137400                                                      437   e-123
Os01g0801200  Conserved hypothetical protein                      134   6e-32

>Os11g0140900 Hypothetical protein
          Length = 274

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/274 (87%), Positives = 239/274 (87%)

Query: 1   MGNWNHHRRPWYRRTRHDRAXXXXXXXXDLGHNCHPIPLWEREFCIYVGGISWHRFCDNK 60
           MGNWNHHRRPWYRRTRHDRA        DLGHNCHPIPLWEREFCIYVGGISWHRFCDNK
Sbjct: 1   MGNWNHHRRPWYRRTRHDRAPRPPSPPPDLGHNCHPIPLWEREFCIYVGGISWHRFCDNK 60

Query: 61  RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKVDHNSKIDPE 120
           RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKVDHNSKIDPE
Sbjct: 61  RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKVDHNSKIDPE 120

Query: 121 LIADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRNWDIYVEKPTEVNKWEQDS 180
           LIADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRNWDIYVEKPTEVNKWEQDS
Sbjct: 121 LIADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRNWDIYVEKPTEVNKWEQDS 180

Query: 181 RSNMDWGTKHESWNEWSKNCSGWGSALADXXXXXXXXXXXXXXXXXRASFNGINRNRYQD 240
           RSNMDWGTKHESWNEWSKNCSGWGSALAD                 RASFNGINRNRYQD
Sbjct: 181 RSNMDWGTKHESWNEWSKNCSGWGSALADSSWGNWNNSNNHHSSNNRASFNGINRNRYQD 240

Query: 241 PSSISGRKRNSGGYIXXXXXXXXXXIEGYQGSRW 274
           PSSISGRKRNSGGYI          IEGYQGSRW
Sbjct: 241 PSSISGRKRNSGGYIQQRNSRQRNQIEGYQGSRW 274



>Os12g0137400 
          Length = 331

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/278 (79%), Positives = 229/278 (82%), Gaps = 6/278 (2%)

Query: 1   MGNWNHHRRPWYRRTRHDRAXXXXXXXXDLGHNCHPIPLWEREFCIYVGGISWHRFCDNK 60
           MGNWNHHRRPW+RR+RH+R           GHNCHP+PLWEREFCIYVGGISWHRFCDNK
Sbjct: 1   MGNWNHHRRPWHRRSRHERPPPPPSPPPHPGHNCHPVPLWEREFCIYVGGISWHRFCDNK 60

Query: 61  RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKVDHNSKIDPE 120
           RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDK+DHNSKIDPE
Sbjct: 61  RYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKIDHNSKIDPE 120

Query: 121 LIADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRNWDIYVEKPTEVNKWEQDS 180
           LIADL MVRLPFE DDELLPADGLGSTDTDNKCQQ+QNQS NWDIYVEKPTEVNKWEQDS
Sbjct: 121 LIADLKMVRLPFERDDELLPADGLGSTDTDNKCQQKQNQSGNWDIYVEKPTEVNKWEQDS 180

Query: 181 RSNMDWGTKHESWNEWSKNCSGWGSALADXXXXX------XXXXXXXXXXXXRASFNGIN 234
           RSNMDWGTKHESWNEWSKNCSGWGSALAD                       R SFNG+N
Sbjct: 181 RSNMDWGTKHESWNEWSKNCSGWGSALADSSALADSSWGNWNNSNNHHSSNNRDSFNGVN 240

Query: 235 RNRYQDPSSISGRKRNSGGYIXXXXXXXXXXIEGYQGS 272
           RNRYQDP+SISGRKRNSGG+I           EGYQGS
Sbjct: 241 RNRYQDPNSISGRKRNSGGHIQQRNSRQRNQTEGYQGS 278



>Os01g0801200 Conserved hypothetical protein
          Length = 341

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 107/223 (47%), Gaps = 52/223 (23%)

Query: 37  IPLWEREFCIYVGGISWHRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQP 96
           +PLWE++FC     I W + C+ K+ + +YKN+  WDDS A + F +AKARF A YHGQP
Sbjct: 33  VPLWEKKFCTDACAIPWGKLCETKKLMSLYKNVVDWDDSAALETFNDAKARFCAVYHGQP 92

Query: 97  SDISLPDPDMYIDKVDHNSKIDPELIADLNMVRLPFEMDDEL--------------LPAD 142
            DI LPDP+MYID V+ +  +DPEL+ADL   R  +   D                +PA 
Sbjct: 93  CDIPLPDPNMYIDMVNQDEHVDPELVADLEKSRRSYPKRDNTAPDGWDSFIFTNKPVPAT 152

Query: 143 GLGSTDTDNKCQQR------------------------------------QNQSRNWDIY 166
           G G  +T N   Q+                                    Q  S NWD+Y
Sbjct: 153 GWGDGETSNTPGQQYPTNWNNHVKQPTEANCMQSSVNWDNYVSQPPQATVQQSSGNWDMY 212

Query: 167 VEKPTEVNKWEQDSRSNMDWGTKHESWNEWSKNCSGWGSALAD 209
           V++  + N WE  +     W  K +S + W ++ SGWGSA  D
Sbjct: 213 VKQQDQANNWEAPTMPGT-WDMKGDSLDAWKRD-SGWGSAAID 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,030,812
Number of extensions: 414111
Number of successful extensions: 778
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 4
Length of query: 274
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 175
Effective length of database: 11,866,615
Effective search space: 2076657625
Effective search space used: 2076657625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)