Os01g0801200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0801200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.03 | 0.23 | 10.5 | -0.328 | 0.234 | -0.851 | -0.051 | 0.34 | -0.108 | 23.9 | 24.53 | 3655 | -- | -- |
| 24.12 | 0.229 | 10.5 | -0.307 | 0.23 | -0.907 | -0.0744 | -- | -0.106 | 23.7 | 23.78 | 3819 | -- | -- |
| 24.04 | 0.228 | 10.5 | -0.326 | 0.235 | -0.857 | -- | 0.312 | -0.108 | 23.9 | 24.26 | 3663 | -- | -- |
| 24.08 | 0.229 | 10.5 | -0.286 | 0.239 | -0.933 | -- | -- | -0.0925 | 23.9 | 23.42 | 3678 | -- | -- |
| 27.21 | 0.243 | 10.5 | -0.353 | -- | -0.869 | -- | 0.49 | -0.112 | -- | 26.58 | 3752 | -- | -- |
| 36.83 | 0.284 | 10.5 | 0.159 | 0.281 | -- | -0.08 | -- | 0.134 | 0.0011 | -- | -- | -- | -- |
| 36.85 | 0.284 | 10.5 | 0.162 | 0.281 | -- | -- | -- | 0.135 | 24 | -- | -- | -- | -- |
| 27.44 | 0.244 | 10.5 | -0.274 | -- | -0.938 | -- | -- | -0.101 | -- | 25.53 | 3755 | -- | -- |
| 25.48 | 0.235 | 10.5 | -- | 0.24 | -0.752 | -- | -- | -0.0359 | 24 | 25.1 | 3553 | -- | -- |
| 41.83 | 0.302 | 10.5 | 0.171 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 37.54 | 0.287 | 10.5 | -- | 0.283 | -- | -- | -- | 0.117 | 0.0186 | -- | -- | -- | -- |
| 27.76 | 0.245 | 10.5 | -- | -- | -0.798 | -- | -- | -0.0522 | -- | 25.8 | 2365 | -- | -- |
| 42.6 | 0.305 | 10.5 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 23.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 4 | 23.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 5 | 23.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 6 | 23.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 13 | 23.64 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 17 | 23.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 20 | 23.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 22 | 23.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 28 | 23.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 29 | 23.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 30 | 23.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 41 | 23.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 52 | 23.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 54 | 23.77 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 56 | 23.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 59 | 23.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 60 | 23.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 77 | 23.81 | radiation | 1 | 14400 | > th | dose independent | sin | 6 | NA |
| 99 | 23.82 | radiation | 1 | 14400 | < th | dose independent | sin | 6 | NA |
| 101 | 23.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 108 | 23.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 113 | 23.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 148 | 23.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 283 | 23.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 303 | 23.94 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 327 | 23.96 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 331 | 23.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 335 | 23.96 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 359 | 23.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 373 | 23.98 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 387 | 23.98 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 400 | 23.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 413 | 24.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 476 | 24.02 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 487 | 24.03 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 488 | 24.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 503 | 24.04 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 504 | 24.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 505 | 24.04 | radiation | 1 | 14400 | < th | dose dependent | sin | 6 | NA |
| 524 | 24.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 526 | 24.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 547 | 24.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 560 | 24.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 582 | 24.08 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 693 | 24.14 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 701 | 24.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 711 | 24.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 715 | 24.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 717 | 24.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 730 | 24.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 739 | 24.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 764 | 24.18 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 766 | 24.18 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 826 | 24.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 848 | 24.19 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 858 | 24.19 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 880 | 24.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 895 | 24.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 919 | 24.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 923 | 24.21 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 933 | 24.22 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 936 | 24.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 979 | 24.23 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 1 |