BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0801200 Os01g0801200|AK112093
         (341 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0801200  Conserved hypothetical protein                      676   0.0  
Os12g0137400                                                      134   1e-31
Os11g0140900  Hypothetical protein                                130   1e-30

>Os01g0801200 Conserved hypothetical protein
          Length = 341

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/341 (95%), Positives = 325/341 (95%)

Query: 1   MGERRSGYRDRGGGEQGRYWRPPRSHGNGNFSVPLWEKKFCTDACAIPWGKLCETKKLMS 60
           MGERRSGYRDRGGGEQGRYWRPPRSHGNGNFSVPLWEKKFCTDACAIPWGKLCETKKLMS
Sbjct: 1   MGERRSGYRDRGGGEQGRYWRPPRSHGNGNFSVPLWEKKFCTDACAIPWGKLCETKKLMS 60

Query: 61  LYKNVVDWDDSAALETFNDAKARFCAVYHGQPCDIPLPDPNMYIDMVNQDEHVDPELVAD 120
           LYKNVVDWDDSAALETFNDAKARFCAVYHGQPCDIPLPDPNMYIDMVNQDEHVDPELVAD
Sbjct: 61  LYKNVVDWDDSAALETFNDAKARFCAVYHGQPCDIPLPDPNMYIDMVNQDEHVDPELVAD 120

Query: 121 LEKSRRSYPKRDNTAPDGWDSFIFTNKPVPATGWGDGETSNTPGQQYPTNWNNHVKQPTE 180
           LEKSRRSYPKRDNTAPDGWDSFIFTNKPVPATGWGDGETSNTPGQQYPTNWNNHVKQPTE
Sbjct: 121 LEKSRRSYPKRDNTAPDGWDSFIFTNKPVPATGWGDGETSNTPGQQYPTNWNNHVKQPTE 180

Query: 181 ANCMQSSVNWDNYVSQPPQATVQQSSGNWDMYVKQQDQANNWEAPTMPGTWDMKGDSLDA 240
           ANCMQSSVNWDNYVSQPPQATVQQSSGNWDMYVKQQDQANNWEAPTMPGTWDMKGDSLDA
Sbjct: 181 ANCMQSSVNWDNYVSQPPQATVQQSSGNWDMYVKQQDQANNWEAPTMPGTWDMKGDSLDA 240

Query: 241 WKRDSGWGSAAIDSWDNHRENCYVPDSQGWSYGHWKXXXXXXXXXXXXXXXXVGPISSKA 300
           WKRDSGWGSAAIDSWDNHRENCYVPDSQGWSYGHWK                VGPISSKA
Sbjct: 241 WKRDSGWGSAAIDSWDNHRENCYVPDSQGWSYGHWKRRNNESSRRNSRGRDRVGPISSKA 300

Query: 301 MKPKYHSEERNGANNGWRHCRVRNNMQYSYENPGCNQSLAM 341
           MKPKYHSEERNGANNGWRHCRVRNNMQYSYENPGCNQSLAM
Sbjct: 301 MKPKYHSEERNGANNGWRHCRVRNNMQYSYENPGCNQSLAM 341



>Os12g0137400 
          Length = 331

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 52/224 (23%)

Query: 33  VPLWEKKFCTDACAIPWGKLCETKKLMSLYKNVVDWDDSAALETFNDAKARFCAVYHGQP 92
           VPLWE++FC     I W + C+ K+ + +YKN+  WDDS A + F +AKARF A YHGQP
Sbjct: 37  VPLWEREFCIYVGGISWHRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQP 96

Query: 93  CDIPLPDPNMYIDMVNQDEHVDPELVADLEKSRRSYPKRDNTAPDGWDSFIFTNKPVPAT 152
            DI LPDP+MYID ++ +  +DPEL+ADL+  R  + + D              + +PA 
Sbjct: 97  SDISLPDPDMYIDKIDHNSKIDPELIADLKMVRLPFERDD--------------ELLPAD 142

Query: 153 GWGDGETSNTPGQQYPTNWNNHVKQPTEANCMQSSVNWDNYVSQPPQATVQQSSGNWDMY 212
           G G  +T N   Q+                    S NWD YV +P               
Sbjct: 143 GLGSTDTDNKCQQK-----------------QNQSGNWDIYVEKPT-------------- 171

Query: 213 VKQQDQANNWEAPTMPGT-WDMKGDSLDAWKRD-SGWGSAAIDS 254
                + N WE  +     W  K +S + W ++ SGWGSA  DS
Sbjct: 172 -----EVNKWEQDSRSNMDWGTKHESWNEWSKNCSGWGSALADS 210



>Os11g0140900 Hypothetical protein
          Length = 274

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 106/223 (47%), Gaps = 52/223 (23%)

Query: 33  VPLWEKKFCTDACAIPWGKLCETKKLMSLYKNVVDWDDSAALETFNDAKARFCAVYHGQP 92
           +PLWE++FC     I W + C+ K+ + +YKN+  WDDS A + F +AKARF A YHGQP
Sbjct: 37  IPLWEREFCIYVGGISWHRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQP 96

Query: 93  CDIPLPDPNMYIDMVNQDEHVDPELVADLEKSRRSYPKRDNTAPDGWDSFIFTNKPVPAT 152
            DI LPDP+MYID V+ +  +DPEL+ADL   R                F   ++ +PA 
Sbjct: 97  SDISLPDPDMYIDKVDHNSKIDPELIADLNMVRL--------------PFEMDDELLPAD 142

Query: 153 GWGDGETSNTPGQQYPTNWNNHVKQPTEANCMQSSVNWDNYVSQPPQATVQQSSGNWDMY 212
           G G  +T N   Q+                    S NWD YV +P               
Sbjct: 143 GLGSTDTDNKCQQR-----------------QNQSRNWDIYVEKPT-------------- 171

Query: 213 VKQQDQANNWEAPTMPGT-WDMKGDSLDAWKRD-SGWGSAAID 253
                + N WE  +     W  K +S + W ++ SGWGSA  D
Sbjct: 172 -----EVNKWEQDSRSNMDWGTKHESWNEWSKNCSGWGSALAD 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,369,615
Number of extensions: 656444
Number of successful extensions: 1134
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 239
Effective length of database: 11,709,973
Effective search space: 2798683547
Effective search space used: 2798683547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)