BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0139100 Os11g0139100|AK121443
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0139100 Similar to 50S ribosomal protein L24 321 1e-88
Os12g0135900 Similar to 50S ribosomal protein L24 217 3e-57
Os06g0683200 Similar to 50S ribosomal protein L24, chloropl... 72 1e-13
>Os11g0139100 Similar to 50S ribosomal protein L24
Length = 159
Score = 321 bits (823), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG
Sbjct: 1 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
Query: 61 EGHTGGIFSIEAPLHVSNVQVLDPVTGKPCKIGYKYLEDGTKVRFARGMNASGAVIPRPE 120
EGHTGGIFSIEAPLHVSNVQVLDPVTGKPCKIGYKYLEDGTKVRFARGMNASGAVIPRPE
Sbjct: 61 EGHTGGIFSIEAPLHVSNVQVLDPVTGKPCKIGYKYLEDGTKVRFARGMNASGAVIPRPE 120
Query: 121 ILKERRKPRPTSPGPKDTPIEHVLEKTYDAKAGIGMPDL 159
ILKERRKPRPTSPGPKDTPIEHVLEKTYDAKAGIGMPDL
Sbjct: 121 ILKERRKPRPTSPGPKDTPIEHVLEKTYDAKAGIGMPDL 159
>Os12g0135900 Similar to 50S ribosomal protein L24
Length = 145
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 121/161 (75%), Gaps = 18/161 (11%)
Query: 1 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG
Sbjct: 1 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
Query: 61 EGHTGGIFSIEAPLHVSNVQVLDPVTGKPC--KIGYKYLEDGTKVRFARGMNASGAVIPR 118
EGHTGGIFSIEAPLHVSNVQVLDPVTG K + L G VR +
Sbjct: 61 EGHTGGIFSIEAPLHVSNVQVLDPVTGLLVKGKFIHTTLATGNHVRLDTSI--------- 111
Query: 119 PEILKERRKPRPTSPGPKDTPIEHVLEKTYDAKAGIGMPDL 159
K S GPKDT IEHVLEKTYDAKAGIGMPDL
Sbjct: 112 -------WKMELKSAGPKDTRIEHVLEKTYDAKAGIGMPDL 145
>Os06g0683200 Similar to 50S ribosomal protein L24, chloroplast precursor (CL24)
Length = 190
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 18 GDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQGEGHTGGIFSIEAPLHVS 77
GD V +I G++KG+ G + R+ + + VIV+ NL KH K E G I IE P+H S
Sbjct: 79 GDTVQVIAGREKGKVGEVTRLFKHNSTVIVKDLNLKSKHKKGTEDEPGEIVMIEGPIHSS 138
Query: 78 NVQVLDPVTGKPCKIGYKYLEDGTKVRF 105
NV + ++G+K+LEDGTKVR+
Sbjct: 139 NVMLYSKEKNVASRVGHKFLEDGTKVRY 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,320,720
Number of extensions: 299366
Number of successful extensions: 913
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)