Os06g0683200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L24, chloroplast precursor (CL24).
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Os06g0683200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L24, chloroplast precursor (CL24).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.92 | 0.618 | 13 | 0.537 | 2.67 | -2.15 | 0.338 | -8.16 | -0.728 | 20.8 | 0.6311 | 1436 | -- | -- |
| 183.75 | 0.631 | 13.2 | -0.277 | 2.68 | -0.918 | 0.354 | -- | -0.93 | 21.2 | 47.49 | 1830 | -- | -- |
| 173.16 | 0.613 | 13 | 0.526 | 2.65 | -2.18 | -- | -8.19 | -0.726 | 20.7 | 0.5838 | 1430 | -- | -- |
| 184.03 | 0.632 | 13.2 | -0.284 | 2.66 | -0.977 | -- | -- | -0.965 | 21.3 | 46.16 | 1801 | -- | -- |
| 283.02 | 0.784 | 13.1 | -0.277 | -- | -4.15 | -- | -4.56 | -1.13 | -- | 1.579 | 2470 | -- | -- |
| 202.24 | 0.667 | 13.2 | -0.188 | 2.69 | -- | 0.44 | -- | -0.798 | 20.9 | -- | -- | -- | -- |
| 202.89 | 0.667 | 13.2 | -0.203 | 2.69 | -- | -- | -- | -0.798 | 20.9 | -- | -- | -- | -- |
| 289.88 | 0.793 | 13.2 | -0.635 | -- | -3.93 | -- | -- | -1.26 | -- | 2.734 | 2458 | -- | -- |
| 186.18 | 0.636 | 13.2 | -- | 2.64 | -0.946 | -- | -- | -0.958 | 21.2 | 46.82 | 1803 | -- | -- |
| 616.63 | 1.16 | 13.1 | -0.203 | -- | -- | -- | -- | -0.817 | -- | -- | -- | -- | -- |
| 203.98 | 0.668 | 13.2 | -- | 2.69 | -- | -- | -- | -0.775 | 20.9 | -- | -- | -- | -- |
| 299.16 | 0.806 | 13.2 | -- | -- | -3.85 | -- | -- | -1.22 | -- | 3.287 | 2454 | -- | -- |
| 617.72 | 1.16 | 13.1 | -- | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 3 | 157.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 8 | 158.45 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 7 |
| 11 | 159.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 18 | 159.89 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 32 | 160.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 45 | 161.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 52 | 161.73 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 90 | 162.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 98 | 163.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 100 | 163.13 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 101 | 163.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 102 | 163.16 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 105 | 163.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 127 | 163.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 164 | 163.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 173 | 163.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 174 | 163.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 196 | 163.81 | humidity | 90.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 228 | 164.06 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 232 | 164.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 234 | 164.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 304 | 164.44 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 324 | 164.60 | humidity | 90.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 379 | 164.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 19 |
| 381 | 164.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 394 | 164.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 410 | 164.97 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 412 | 164.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 424 | 165.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 444 | 165.11 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 475 | 165.30 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 532 | 165.52 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 625 | 165.86 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 627 | 165.86 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 686 | 166.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 694 | 166.12 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 697 | 166.12 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 712 | 166.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 732 | 166.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 733 | 166.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 741 | 166.22 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 765 | 166.28 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 771 | 166.30 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 777 | 166.31 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 783 | 166.32 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 819 | 166.39 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 885 | 166.54 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 926 | 166.64 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 5 |