Os11g0139100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L24.
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Os11g0139100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L24.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.25 | 0.343 | 10.4 | -0.662 | 1.52 | -1.51 | -0.314 | 1.13 | -0.316 | 21.7 | 28.87 | 218 | -- | -- |
| 54.71 | 0.344 | 10.4 | -0.451 | 1.52 | -1.49 | -0.219 | -- | -0.268 | 21.6 | 28.04 | 222 | -- | -- |
| 53.6 | 0.341 | 10.4 | -0.64 | 1.52 | -1.52 | -- | 1.04 | -0.317 | 21.7 | 28.66 | 217 | -- | -- |
| 54.88 | 0.345 | 10.4 | -0.455 | 1.52 | -1.53 | -- | -- | -0.272 | 21.7 | 28.14 | 219 | -- | -- |
| 136.58 | 0.544 | 10.4 | -1.06 | -- | -2.51 | -- | 2.27 | -0.432 | -- | 41.97 | 658 | -- | -- |
| 87.14 | 0.438 | 10.3 | -0.0689 | 1.62 | -- | -0.373 | -- | 0.0577 | 20.6 | -- | -- | -- | -- |
| 87.59 | 0.438 | 10.3 | -0.0572 | 1.62 | -- | -- | -- | 0.0576 | 20.6 | -- | -- | -- | -- |
| 137.33 | 0.546 | 10.3 | -0.661 | -- | -2.37 | -- | -- | -0.317 | -- | 30.1 | 625 | -- | -- |
| 59.75 | 0.36 | 10.4 | -- | 1.53 | -1.34 | -- | -- | -0.186 | 21.5 | 28.12 | 216 | -- | -- |
| 235.03 | 0.716 | 10.3 | -0.0616 | -- | -- | -- | -- | 0.0436 | -- | -- | -- | -- | -- |
| 87.68 | 0.438 | 10.3 | -- | 1.62 | -- | -- | -- | 0.0639 | 20.6 | -- | -- | -- | -- |
| 148.08 | 0.567 | 10.3 | -- | -- | -2.16 | -- | -- | -0.304 | -- | 29.91 | 631 | -- | -- |
| 235.13 | 0.716 | 10.3 | -- | -- | -- | -- | -- | 0.0504 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 52.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 3 | 52.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 6 | 53.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 15 | 53.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 28 | 54.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 37 | 54.48 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 46 | 54.62 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 50 | 54.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 54 | 54.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 57 | 54.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 178 | 56.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 317 | 56.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 382 | 57.21 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 426 | 57.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 550 | 57.59 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 609 | 57.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 642 | 57.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 682 | 57.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 683 | 57.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 693 | 57.91 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 742 | 57.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 936 | 58.19 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |