BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0139100 Os11g0139100|AK121443
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23535.1  | chr5:7935871-7937127 FORWARD LENGTH=160            265   9e-72
AT5G54600.1  | chr5:22183046-22184403 FORWARD LENGTH=199           69   9e-13

>AT5G23535.1 | chr5:7935871-7937127 FORWARD LENGTH=160
          Length = 159

 Score =  265 bits (676), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 140/159 (88%)

Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGE+G IKRVIRSQNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  EGHTGGIFSIEAPLHVSNVQVLDPVTGKPCKIGYKYLEDGTKVRFARGMNASGAVIPRPE 120
             H GGIF++EAPLH SNVQV+DPVTG+PCK+G KYLEDGTKVR ARG   SG++IPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKERRKPRPTSPGPKDTPIEHVLEKTYDAKAGIGMPDL 159
           ILK R  PRPT+ GPKDTP+E V E+TYDAK G GMPDL
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159



>AT5G54600.1 | chr5:22183046-22184403 FORWARD LENGTH=199
          Length = 198

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 18  GDNVMIIRGKDKGESGLIKRVIRSQNRVIVEGKNLVKKHIK-QGEGHTGGIFSIEAPLHV 76
           GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + EG  G I  IEAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 77  SNVQVLDPVTGKPCKIGYKYLEDGTKVRFARGMNASGAVIPRPEILKERRKPRPT 131
           SNV +         ++G+K LEDG KVR+          I + ++LKE +    T
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLKEAKDKETT 190



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,863,488
Number of extensions: 174567
Number of successful extensions: 433
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)