BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0138600 Os11g0138600|Os11g0138600
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0138600 Phosphoglycerate mutase domain containing protein 462 e-131
Os12g0135100 461 e-130
Os08g0476400 Phosphoglycerate/bisphosphoglycerate mutase fa... 178 2e-45
Os11g0138533 Phosphoglycerate/bisphosphoglycerate mutase fa... 158 3e-39
Os11g0138500 Bunyavirus nucleocapsid (N) protein family pro... 131 3e-31
Os02g0325401 Phosphoglycerate mutase domain containing protein 80 1e-15
>Os11g0138600 Phosphoglycerate mutase domain containing protein
Length = 224
Score = 462 bits (1189), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLA 60
MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLA
Sbjct: 1 MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLA 60
Query: 61 KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPD 120
KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPD
Sbjct: 61 KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPD 120
Query: 121 AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA 180
AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA
Sbjct: 121 AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA 180
Query: 181 DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP 224
DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP
Sbjct: 181 DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP 224
>Os12g0135100
Length = 250
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/224 (99%), Positives = 223/224 (99%)
Query: 1 MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLA 60
MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQ DIELNEAGRQQAVMVARRLA
Sbjct: 27 MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQMDIELNEAGRQQAVMVARRLA 86
Query: 61 KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPD 120
KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKF+DAVRSKPD
Sbjct: 87 KEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFDDAVRSKPD 146
Query: 121 AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA 180
AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA
Sbjct: 147 AYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVSHGASIEELCRHA 206
Query: 181 DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP 224
DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP
Sbjct: 207 DPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP 250
>Os08g0476400 Phosphoglycerate/bisphosphoglycerate mutase family protein
Length = 309
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 134/253 (52%), Gaps = 72/253 (28%)
Query: 12 SHGEDFAEVVVVRHGETSANALCIIQ---------------------------------- 37
S +F EVVVVRHGET+ NA IIQ
Sbjct: 70 SEAGEFTEVVVVRHGETAWNASRIIQVPCSVPPAPSPIYFSEALVFNFGEKLWLGKLGRI 129
Query: 38 ----------GQTDIELNEAGRQQAVMVARRLAKEAKPVAVYSSDLKRAAETAQTIATAC 87
G D+ELNE GRQQAV V + + A
Sbjct: 130 NDSLVVHLFLGHLDVELNEIGRQQAVAVWYDIFQIA------------------------ 165
Query: 88 NVSNLVLSPALRERHMGDLHGLKFEDAVRSKPDAYKAFSSEDRSQEIPGGGESLDQLSER 147
+V PALRERH+GDL GLK+EDA + KP+AY+AF S R+++IPGGGESLDQLSER
Sbjct: 166 ----VVFDPALRERHIGDLQGLKYEDAGKEKPEAYRAFLSHKRNRQIPGGGESLDQLSER 221
Query: 148 CVSYLNTIAGKHKGERVIVVSHGASIEELCRHADPTSSVRRRIPNTSICVFNISGSTGHW 207
CVS L I KH+GER+I+VSHG +I EL RHA P + +I NTS+ V +SG+TG
Sbjct: 222 CVSCLYNIVEKHQGERIILVSHGGTIRELYRHASPMKPLHGKIHNTSVSVILVSGATGRC 281
Query: 208 ILERFGDVAHLNE 220
I++ GD++HL E
Sbjct: 282 IVKACGDISHLKE 294
>Os11g0138533 Phosphoglycerate/bisphosphoglycerate mutase family protein
Length = 196
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 9/128 (7%)
Query: 17 FAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKEAKPVAVYSSDLKRA 76
F E+VVVRHGETS NA I+QGQ D ELNE G+QQAV+VARRLA+EA+P A+YSSDLKRA
Sbjct: 63 FVELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAIYSSDLKRA 122
Query: 77 AETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPDAYKAFSS--------- 127
AETA+ IA AC+VSNL+L+ ALRERHMG L GL ++DAV P +K F++
Sbjct: 123 AETAEIIAKACDVSNLMLTEALRERHMGYLQGLMWDDAVNKSPSVFKGFANFEVKNGLDF 182
Query: 128 EDRSQEIP 135
+DR+ E+P
Sbjct: 183 DDRNHELP 190
>Os11g0138500 Bunyavirus nucleocapsid (N) protein family protein
Length = 118
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 80/116 (68%), Gaps = 12/116 (10%)
Query: 109 LKFEDAVRSKPDAYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGERVIVVS 168
+F RS +K+ GGGESL+QLSERC+SYLN +A H GERVIVV
Sbjct: 2 WRFRSVFRSPTWRFKS-----------GGGESLNQLSERCISYLNKVAQNHIGERVIVVG 50
Query: 169 HGASIEELCRHADPTS-SVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDF 223
HGA+I ELCRH DP + S+RR+IPNTS+ +F ISG TG WILER GDV HL+E+ F
Sbjct: 51 HGAAILELCRHTDPPNRSIRRKIPNTSLNIFRISGVTGRWILERCGDVGHLSENGF 106
>Os02g0325401 Phosphoglycerate mutase domain containing protein
Length = 70
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 52 AVMVARRLAKEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKF 111
A VA RLA+EA+P VY SDLKRA ETA+ I AC+VSN+VL+ A RERHMG L GL +
Sbjct: 7 ASQVAHRLAREARPTVVYLSDLKRAVETAEIIEKACDVSNIVLTEAPRERHMGYLQGLTW 66
Query: 112 EDAV 115
+D +
Sbjct: 67 DDTM 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,941,608
Number of extensions: 299555
Number of successful extensions: 903
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)