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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0476400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoglycerate/bisphosphoglycerate mutase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0431) R2 : 0.355
β1 : 0.0532 (0.158) R2dD : 0.000287 R2D : -0.077
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.82 (0.236) R2dE : 0.142 R2E : -0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.89 (1.04) R2dD*E : 0.228 R2D*E : -0.126
γ1 : -1.07 (0.0935) R2dN8 : 0.261 R2N8 : 0.224
σ : 0.795
deviance : 291.31
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 4.734
memory length : 3793
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 6.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
276.77 0.782 10.9 0.0562 0.456 1.79 0.73 9.96 -1.07 13 4.725 3564 20.2 6.85
328.87 0.845 10.8 0.27 0.392 0.659 0.337 -- -1.04 12 3.043 3825 19.8 6.73
278.92 0.778 10.9 0.081 0.457 1.81 -- 9.88 -1.06 13.2 4.694 3562 20.2 6.83
327.84 0.843 10.8 0.308 0.445 0.814 -- -- -1.03 13.6 2.837 3800 19.7 6.67
291.31 0.795 10.9 0.0532 -- 1.82 -- 9.89 -1.07 -- 4.734 3793 20.2 6.93
336.73 0.86 10.9 0.17 0.423 -- 0.423 -- -1.1 12.6 -- -- -- --
337.43 0.86 10.9 0.187 0.424 -- -- -- -1.1 12.9 -- -- -- --
336.47 0.854 10.8 0.488 -- 0.998 -- -- -0.931 -- 4.101 11547 19.6 7.18
330.07 0.846 10.8 -- 0.43 0.785 -- -- -1.04 13.7 2.886 3803 19.7 6.82
348.63 0.872 10.9 0.171 -- -- -- -- -1.11 -- -- -- -- --
338.35 0.86 10.9 -- 0.421 -- -- -- -1.12 12.9 -- -- -- --
341.15 0.86 10.8 -- -- 0.916 -- -- -0.915 -- 3.776 11551 19.8 5.2
349.41 0.872 10.9 -- -- -- -- -- -1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.30 wind 9 14400 < th dose independent rect. 6 7
5 279.77 wind 9 14400 < th dose independent rect. 1 12
10 280.53 wind 9 14400 > th dose independent rect. 5 8
11 280.69 wind 9 14400 < th dose independent rect. 10 2
13 280.93 temperature 20 1440 < th dose independent rect. 5 1
14 280.99 wind 9 14400 > th dose independent rect. 6 6
18 281.20 temperature 20 1440 > th dose independent rect. 5 1
22 282.00 wind 9 14400 > th dose independent rect. 10 2
24 282.14 wind 3 43200 > th dose independent rect. 1 1
25 282.16 temperature 20 4320 > th dose independent rect. 22 1
35 283.41 wind 9 14400 > th dose dependent rect. 5 8
37 283.59 wind 3 43200 < th dose independent rect. 1 1
38 283.68 wind 3 14400 < th dose independent rect. 5 1
40 283.80 wind 5 4320 > th dose independent rect. 20 6
45 284.22 wind 3 14400 > th dose independent rect. 5 1
46 284.25 wind 9 14400 > th dose dependent rect. 11 2
50 284.44 wind 5 4320 < th dose independent rect. 20 6
56 284.73 wind 1 43200 > th dose dependent rect. 1 1
60 285.07 wind 3 14400 < th dose independent rect. 1 6
61 285.07 wind 5 4320 > th dose dependent rect. 20 7
63 285.34 wind 3 14400 > th dose independent rect. 1 6
80 286.47 wind 5 43200 < th dose dependent rect. 1 1
83 286.76 temperature 20 4320 < th dose independent rect. 22 1
97 287.39 temperature 20 4320 < th dose dependent rect. 1 1
98 287.41 wind 3 14400 < th dose dependent rect. 5 2
133 289.26 humidity 80 14400 < th dose dependent rect. 6 1
146 289.60 atmosphere 1005 14400 < th dose independent rect. 23 1
147 289.61 wind 1 14400 > th dose dependent rect. 5 1
177 290.36 humidity 80 14400 < th dose independent rect. 6 1
191 290.66 humidity 80 1440 < th dose independent rect. 3 9
218 291.11 temperature 25 1440 < th dose dependent rect. 13 9
225 291.33 humidity 80 1440 > th dose independent rect. 3 9
229 291.37 temperature 25 1440 < th dose dependent rect. 13 14
239 291.49 temperature 20 4320 < th dose dependent rect. 4 1
241 291.50 temperature 25 1440 < th dose dependent rect. 11 16
268 291.68 humidity 70 1440 > th dose dependent rect. 2 10
282 291.81 temperature 20 1440 > th dose independent rect. 3 16
295 291.91 wind 1 14400 > th dose dependent rect. 1 6
300 291.97 temperature 20 4320 < th dose dependent rect. 21 8
309 292.08 wind 5 14400 < th dose dependent rect. 1 6
321 292.16 temperature 20 1440 > th dose independent rect. 3 18
326 292.22 humidity 80 14400 > th dose independent rect. 6 1
330 292.24 temperature 25 1440 < th dose dependent sin 17 NA
366 292.56 temperature 20 1440 > th dose dependent rect. 1 2
387 292.72 wind 5 4320 < th dose independent rect. 20 1
437 293.05 temperature 20 1440 < th dose independent rect. 3 18
438 293.06 humidity 80 1440 > th dose independent rect. 23 13
451 293.11 temperature 20 1440 < th dose independent rect. 3 16
480 293.26 wind 9 14400 < th dose independent sin 5 NA
522 293.54 temperature 20 4320 < th dose independent rect. 13 15
530 293.59 atmosphere 1015 4320 < th dose independent rect. 14 3
541 293.63 atmosphere 1015 4320 < th dose independent rect. 13 1
545 293.63 temperature 20 4320 < th dose dependent sin 12 NA
548 293.66 temperature 20 4320 < th dose independent rect. 18 10
553 293.68 temperature 20 4320 > th dose independent rect. 13 15
558 293.70 atmosphere 1015 4320 > th dose independent rect. 12 1
577 293.75 temperature 20 4320 > th dose independent rect. 18 10
581 293.76 atmosphere 1015 4320 > th dose dependent rect. 12 1
596 293.80 temperature 20 4320 > th dose independent rect. 20 8
605 293.83 temperature 20 4320 < th dose independent rect. 20 8
659 294.01 temperature 20 4320 < th dose independent rect. 13 18
682 294.08 wind 3 14400 < th dose independent rect. 1 12
696 294.12 temperature 20 4320 < th dose independent sin 15 NA
717 294.16 temperature 20 4320 < th dose independent rect. 18 13
730 294.21 temperature 20 1440 > th dose independent rect. 18 13
735 294.22 humidity 90 14400 < th dose dependent rect. 3 2
749 294.26 temperature 20 4320 > th dose independent rect. 13 18
772 294.31 wind 3 14400 < th dose dependent rect. 4 9
777 294.32 temperature 20 1440 > th dose independent rect. 20 11
781 294.34 temperature 20 4320 > th dose independent sin 15 NA
795 294.36 humidity 50 4320 < th dose dependent rect. 13 1
906 294.65 atmosphere 1015 4320 < th dose independent rect. 19 1
978 294.81 temperature 25 1440 < th dose dependent rect. 20 1