BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0134100 Os11g0134100|Os11g0134100
(644 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0134100 Rhamnogalacturonate lyase family protein 1270 0.0
Os12g0131900 Similar to MYST1 protein (Fragment) 1147 0.0
Os08g0554100 Similar to MYST1 protein (Fragment) 640 0.0
Os08g0554300 Similar to MYST1 protein (Fragment) 603 e-172
>Os11g0134100 Rhamnogalacturonate lyase family protein
Length = 644
Score = 1270 bits (3286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/611 (100%), Positives = 611/611 (100%)
Query: 34 VPAKGPRPGGSVTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSA 93
VPAKGPRPGGSVTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSA
Sbjct: 34 VPAKGPRPGGSVTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSA 93
Query: 94 GYWDVVWNFPGSNSPRGMIDMLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTD 153
GYWDVVWNFPGSNSPRGMIDMLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTD
Sbjct: 94 GYWDVVWNFPGSNSPRGMIDMLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTD 153
Query: 154 KFNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNK 213
KFNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNK
Sbjct: 154 KFNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNK 213
Query: 214 DNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIV 273
DNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIV
Sbjct: 214 DNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIV 273
Query: 274 LKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVQAEVEARKWPYSFPESPDFHKA 333
LKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVQAEVEARKWPYSFPESPDFHKA
Sbjct: 274 LKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVQAEVEARKWPYSFPESPDFHKA 333
Query: 334 GQRGSVTGRLFVKDRYVSSKDIAAGMAYVGLASPGQPGSWATESNNYQFWTRATPCGSFS 393
GQRGSVTGRLFVKDRYVSSKDIAAGMAYVGLASPGQPGSWATESNNYQFWTRATPCGSFS
Sbjct: 334 GQRGSVTGRLFVKDRYVSSKDIAAGMAYVGLASPGQPGSWATESNNYQFWTRATPCGSFS 393
Query: 394 IGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDR 453
IGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDR
Sbjct: 394 IGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDR 453
Query: 454 SAAEFFIPDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAH 513
SAAEFFIPDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAH
Sbjct: 454 SAAEFFIPDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAH 513
Query: 514 ITRKQGDGYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGSADEALTTAAA 573
ITRKQGDGYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGSADEALTTAAA
Sbjct: 514 ITRKQGDGYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGSADEALTTAAA 573
Query: 574 FGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGPP 633
FGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGPP
Sbjct: 574 FGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGPP 633
Query: 634 SPSWRDPTTQV 644
SPSWRDPTTQV
Sbjct: 634 SPSWRDPTTQV 644
>Os12g0131900 Similar to MYST1 protein (Fragment)
Length = 1321
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/654 (85%), Positives = 578/654 (88%), Gaps = 55/654 (8%)
Query: 34 VPAKGPRPGGS-VTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANS 92
VP KGPRPGG VTLHLDHRQVMVDNGIVQV+LS PGGHITGVRYNGERNLL +DG+ NS
Sbjct: 36 VPEKGPRPGGGGVTLHLDHRQVMVDNGIVQVSLSKPGGHITGVRYNGERNLLRFDGQPNS 95
Query: 93 AGYWDVVWNFPGSNSPRGMIDML------------------------------------- 115
AGYWDVVWNFPGSN+PRGMIDML
Sbjct: 96 AGYWDVVWNFPGSNNPRGMIDMLDSTEFKVVSSSEDQVELSFRSTYNPSRPNSVRLNIDK 155
Query: 116 --VMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTD-------------KFNYMAI 160
VMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTD +FNYMAI
Sbjct: 156 RLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTDNLILKTCVHERFVRFNYMAI 215
Query: 161 SDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGW 220
SDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGW
Sbjct: 216 SDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGW 275
Query: 221 ISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGE 280
ISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGE
Sbjct: 276 ISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGE 335
Query: 281 YWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVQAEVEARKWPYSFPESPDFHKAGQRGSVT 340
YWKKVMGPVFIYLNSNPRRGDLHSLWVDAK+QAE EARKWPYSFP SPDFHKA QRGSVT
Sbjct: 336 YWKKVMGPVFIYLNSNPRRGDLHSLWVDAKLQAEAEARKWPYSFPVSPDFHKASQRGSVT 395
Query: 341 GRLFVKDRYVSSKDIAAGMAYVGLASPGQPGSWATESNNYQFWTRATPCGSFSIGNVRAG 400
GRLFV+DRY+SSKD+AAGMA+VGLA+PGQPGSW TES NYQFWTRATPCGSFSI NVRAG
Sbjct: 396 GRLFVRDRYMSSKDMAAGMAFVGLATPGQPGSWVTESKNYQFWTRATPCGSFSISNVRAG 455
Query: 401 VYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFI 460
VYNLYAWVPGFLGDYMYTSQVTVTPGR INLGDLVFEPPRSGPTLWEMGVPDRSAAEFFI
Sbjct: 456 VYNLYAWVPGFLGDYMYTSQVTVTPGRGINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFI 515
Query: 461 PDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAHITRKQGD 520
PDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGE+DISKDWFFAH+TRKQGD
Sbjct: 516 PDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGESDISKDWFFAHVTRKQGD 575
Query: 521 GYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGSADEALTTAAAFGDGNAI 580
GYA TTRQIRFRLE VVADATYTLRVELAAAQM+RVQVVVNG ADEALTTAAAFGDGNAI
Sbjct: 576 GYAATTRQIRFRLERVVADATYTLRVELAAAQMARVQVVVNGRADEALTTAAAFGDGNAI 635
Query: 581 ARHGVHGVQWSLDFAMKGYMLQEG--DNVVLMTQTRALSPFFGVMYDYIRLEGP 632
ARHG HGVQWSL+FA+KGYML EG +NVV +TQTRALSPFFGVMYDYIR P
Sbjct: 636 ARHGAHGVQWSLEFAIKGYMLVEGEEENVVFITQTRALSPFFGVMYDYIRCSVP 689
>Os08g0554100 Similar to MYST1 protein (Fragment)
Length = 658
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/640 (50%), Positives = 409/640 (63%), Gaps = 44/640 (6%)
Query: 35 PAKGPRPG-GSVTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSA 93
PA P V++ + R V + NGI ++TLSNP G +TGVRYNG NL+ + ++
Sbjct: 18 PATSPAGATAGVSVKVSDRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNR 77
Query: 94 GYWDVVWN--------------------------------------FPGSNSPRGMIDML 115
GYWD+VW+ G P +
Sbjct: 78 GYWDLVWSKLGERTGIFDVIKGTEFRIIYQDENHAEVSFVRTWDPSLEGKAVPLNIDKRF 137
Query: 116 VMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTDKFNYMAISDDIQRFMPSATDRD 175
++L+G SGFY Y I+EH WP ++ E R+AFKL DKF+YMA++DD QR MP DR
Sbjct: 138 IVLRGCSGFYTYGIYEHQEGWPGFSLGETRVAFKLRKDKFHYMALADDRQRIMPMPEDRV 197
Query: 176 APRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGWISSNHPNPMGFWVIT 235
PRG LAY EAVLLVDP P RGEVDDKY+YS +++ N VHGWIS + P +GFW IT
Sbjct: 198 PPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVHGWISFDPP--IGFWQIT 255
Query: 236 PSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGEYWKKVMGPVFIYLNS 295
PS+EF++GGP+K+ LTSHVGPT L MFL HY G+D+ K GEYWKKV GPVF+YLNS
Sbjct: 256 PSDEFRTGGPVKQNLTSHVGPTMLAMFLSGHYAGDDLTPKFLTGEYWKKVHGPVFMYLNS 315
Query: 296 NPRRGDLHSLWVDAKVQAEVEARKWPYSFPESPDFHKAGQRGSVTGRLFVKDRYVSSKDI 355
+ D LW DAKVQ +E WPY F S DF K QRG ++GRL V+DRY+ D+
Sbjct: 316 SWDGSDPTLLWEDAKVQMMIEKESWPYCFALSDDFQKTEQRGCISGRLLVRDRYLDDADL 375
Query: 356 AAGMAYVGLASPGQPGSWATESNNYQFWTRATPCGSFSIGNVRAGVYNLYAWVPGFLGDY 415
A AYVGLA PG GSW E YQFW RA GSF I N+ AG YNLYAWVPGF+GDY
Sbjct: 376 YATSAYVGLALPGDVGSWQRECKGYQFWCRAEDDGSFCIRNIVAGDYNLYAWVPGFIGDY 435
Query: 416 MYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFIPDPNPKYLNKIFITK 475
+++T++ G I LGDLV+EPPR GPT+WE+G+PDRSA+EFF+PDPNP Y+N+++I
Sbjct: 436 KLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRSASEFFVPDPNPNYVNRLYINH 495
Query: 476 -DKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAHITRKQGDG-YAPTTRQIRFRL 533
D++RQYGLWERYAELYPDGDLV+TIG++D + DWFFA + R+ Y PTT QI+F L
Sbjct: 496 PDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNL 555
Query: 534 EHVVADATYTLRVELAAAQMSRVQVVVNGSADEA-LTTAAAFGDGNAIARHGVHGVQWSL 592
+ V ++TY RV LA++ + +QV N A T G N IARHG+HG+ W
Sbjct: 556 DSVSPNSTYKFRVALASSANAELQVRFNDQDRTAPHFTTGLIGKDNTIARHGIHGLYWLF 615
Query: 593 DFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGP 632
+ + G L +G N + + Q R SPF G+MYDY+R+EGP
Sbjct: 616 NIDVSGAWLVQGMNTIYLKQPRNQSPFQGLMYDYLRMEGP 655
>Os08g0554300 Similar to MYST1 protein (Fragment)
Length = 606
Score = 603 bits (1555), Expect = e-172, Method: Compositional matrix adjust.
Identities = 315/611 (51%), Positives = 404/611 (66%), Gaps = 24/611 (3%)
Query: 35 PAKGPRPGGS---VTLHLDHRQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEAN 91
P P G+ V++ + R V + NGI +VTLSNP G +TGVRYNG NL+ + +
Sbjct: 4 PPATSSPAGATAGVSVMVSDRYVEIKNGIFEVTLSNPDGIVTGVRYNGVDNLMEILNKED 63
Query: 92 SAGYWDVVWNFPGSNSPRGMIDMLVMLKGSSGFYCY-----AIFEHVRDW-PALNISEAR 145
GYWD+VW+ G + G+ D++ KG+ Y A VR W P+L E +
Sbjct: 64 KRGYWDLVWSKLGERT--GIFDVI---KGTEFRIIYQDENQAEVSFVRTWDPSL---EGK 115
Query: 146 LAFKLNTDK-FNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDD 204
A LN DK F+YMA++DD +R MP DR +PRG LAY EAVLLVDP P RGEVDD
Sbjct: 116 -AVPLNIDKRFHYMALADDRKRIMPMPEDRVSPRGQQLAYPEAVLLVDPINPDLRGEVDD 174
Query: 205 KYEYSLDNKDNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLG 264
KY+YS +N+ N VHGWIS + P +GFW ITPS+EF++GGP+K+ LTSHVGPT L MFL
Sbjct: 175 KYQYSCENQYNNVHGWISFDPP--IGFWQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLS 232
Query: 265 THYVGNDIVLKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVQAEVEARKWPYSF 324
HY G+D+ K GEYWKKV GPVF+YLNS+ + LW DAKVQ +E WPY F
Sbjct: 233 GHYAGDDLTPKFMTGEYWKKVHGPVFMYLNSSWDGSNPTLLWKDAKVQMMIEKESWPYYF 292
Query: 325 PESPDFHKAGQRGSVTGRLFVKDRYVSSKDIAAGMAYVGLASPGQPGSWATESNNYQFWT 384
S DF K QRG ++GRL V+DRY+ D+ AYVGLA PG GSW E YQFW
Sbjct: 293 ALSDDFQKTEQRGRISGRLLVRDRYLHDADLYGTSAYVGLALPGDVGSWQRECKGYQFWC 352
Query: 385 RATPCGSFSIGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPT 444
RA GSFSI N+ AG YNLYAWVPGF+GDY +++T++ G I LGDLV+EPPR GPT
Sbjct: 353 RAHDGGSFSIRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPT 412
Query: 445 LWEMGVPDRSAAEFFIPDPNPKYLNKIFITK-DKYRQYGLWERYAELYPDGDLVFTIGEN 503
+WE+G+PDRSA+EF++PDPNP Y+N+++I D++RQYGLWERYAELYPDGDLV+TIG++
Sbjct: 413 MWEIGIPDRSASEFYVPDPNPNYVNRLYINHPDRFRQYGLWERYAELYPDGDLVYTIGQS 472
Query: 504 DISKDWFFAHITRKQGDG-YAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNG 562
D + DWFFA + R+ Y PTT QI+F L+ V ++TY RV LA++ + +QV N
Sbjct: 473 DYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKFRVALASSANAELQVRFNN 532
Query: 563 SADEA-LTTAAAFGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFG 621
A T G N IARHG+H + W + + G L +G N + + Q R SPF G
Sbjct: 533 QDRTAPHFTTGLIGKDNTIARHGIHALYWLFNIDVSGAWLVQGMNTIYLKQPRNQSPFQG 592
Query: 622 VMYDYIRLEGP 632
+MYDY+R+EGP
Sbjct: 593 LMYDYLRMEGP 603
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,246,549
Number of extensions: 1123609
Number of successful extensions: 2021
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2008
Number of HSP's successfully gapped: 5
Length of query: 644
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 537
Effective length of database: 11,448,903
Effective search space: 6148060911
Effective search space used: 6148060911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)