Os11g0134100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhamnogalacturonate lyase family protein.
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Os11g0134100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhamnogalacturonate lyase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158 | 0.591 | 5.45 | 0.36 | 0.419 | 1.59 | 0.455 | 0.557 | -0.134 | 7.03 | 22.3 | 1326 | -- | -- |
| 158.55 | 0.586 | 5.44 | 0.518 | 0.383 | 1.56 | 0.457 | -- | -0.104 | 6.68 | 22.2 | 1206 | -- | -- |
| 158.52 | 0.586 | 5.45 | 0.366 | 0.418 | 1.59 | -- | 0.566 | -0.133 | 7.19 | 22.3 | 1325 | -- | -- |
| 158.99 | 0.587 | 5.44 | 0.53 | 0.372 | 1.55 | -- | -- | -0.104 | 6.41 | 22.29 | 1153 | -- | -- |
| 164.33 | 0.597 | 5.47 | 0.359 | -- | 1.56 | -- | 0.572 | -0.155 | -- | 22.2 | 1030 | -- | -- |
| 254.89 | 0.748 | 5.55 | -0.0182 | 0.416 | -- | 0.276 | -- | -0.626 | 8.21 | -- | -- | -- | -- |
| 255.11 | 0.748 | 5.55 | -0.00948 | 0.414 | -- | -- | -- | -0.626 | 8.34 | -- | -- | -- | -- |
| 165.13 | 0.599 | 5.45 | 0.54 | -- | 1.55 | -- | -- | -0.107 | -- | 22.2 | 1030 | -- | -- |
| 165.48 | 0.599 | 5.46 | -- | 0.371 | 1.42 | -- | -- | -0.184 | 6.44 | 22.35 | 1147 | -- | -- |
| 264.65 | 0.76 | 5.56 | -0.00697 | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
| 255.11 | 0.747 | 5.55 | -- | 0.414 | -- | -- | -- | -0.625 | 8.35 | -- | -- | -- | -- |
| 171.64 | 0.61 | 5.47 | -- | -- | 1.39 | -- | -- | -0.191 | -- | 22.34 | 1001 | -- | -- |
| 264.65 | 0.759 | 5.56 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 157.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 34 | 160.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 36 | 160.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 40 | 160.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 69 | 160.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 181 | 161.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 191 | 161.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 242 | 162.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 258 | 162.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 330 | 162.84 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 395 | 163.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 483 | 163.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 542 | 163.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 610 | 164.29 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 716 | 164.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 824 | 165.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 847 | 165.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 964 | 165.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |