BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0131100 Os11g0131100|J080034P09
         (181 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0131100  VQ domain containing protein                        140   4e-34
Os12g0127800  VQ domain containing protein                         88   4e-18

>Os11g0131100 VQ domain containing protein
          Length = 181

 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 87/181 (48%)

Query: 1   MLTAAMHMLDSSTXXXXXXXXXXXXXXXXAATLHXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MLTAAMHMLDSST                AATLH                          
Sbjct: 1   MLTAAMHMLDSSTSSSPWLPPDLMPPPPSAATLHRHFRGAAAAASTSRRIAKRRPRPSRR 60

Query: 61  XXXXYISADPANFRRMVHQVTGADDXXXXXXXXXXXXXXELLRHXXXXXXXXXXXXLMLP 120
               YISADPANFRRMVHQVTGADD              ELLRH            LMLP
Sbjct: 61  LPTTYISADPANFRRMVHQVTGADDLPPPPPPSLSPTTTELLRHAAPAGSPGPAGALMLP 120

Query: 121 TLDTSAFLLGRRAEPTAAAAPCDVSVALVXXXXXXXXXXXXXXXXXXXXXXFPTLDSWDL 180
           TLDTSAFLLGRRAEPTAAAAPCDVSVALV                      FPTLDSWDL
Sbjct: 121 TLDTSAFLLGRRAEPTAAAAPCDVSVALVGGAGNSYSNNSSSSSSGNCGGGFPTLDSWDL 180

Query: 181 L 181
           L
Sbjct: 181 L 181



>Os12g0127800 VQ domain containing protein
          Length = 206

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 65/124 (52%), Gaps = 7/124 (5%)

Query: 65  YISADPANFRRMVHQVTGADDXXXXXXXXXXXXXXELL---RHXXXXXXXXXXXXLMLPT 121
           YISADPANFRRMVHQVTGADD              ELL    H            LMLPT
Sbjct: 63  YISADPANFRRMVHQVTGADDLPPPPPSLSLQQTTELLLPAVHAAPAGSPGAAGALMLPT 122

Query: 122 LDTSAFLLGRRAEPTAAAAPCDVSVALVXXXX----XXXXXXXXXXXXXXXXXXFPTLDS 177
           LDTSAFLLGRRAEP AAA PCD SVALV                          FPTLDS
Sbjct: 123 LDTSAFLLGRRAEPAAAAPPCDESVALVRGGAGNYGSNNNSISSSSSSGNCGGGFPTLDS 182

Query: 178 WDLL 181
           WDLL
Sbjct: 183 WDLL 186



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,631,742
Number of extensions: 44179
Number of successful extensions: 127
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)