Os12g0127800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os12g0127800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.67 | 0.926 | 3.2 | 0.513 | 0.539 | 1.34 | 1.03 | 2.54 | 0.322 | 14.1 | 27.32 | 31 | -- | -- |
| 394.77 | 0.925 | 3.15 | 0.948 | 0.573 | 1.31 | 0.205 | -- | 0.402 | 14.2 | 30.6 | 13 | -- | -- |
| 390.43 | 0.92 | 3.19 | 0.628 | 0.472 | 1.32 | -- | 2.07 | 0.337 | 15 | 27.01 | 156 | -- | -- |
| 394.91 | 0.926 | 3.15 | 0.96 | 0.57 | 1.29 | -- | -- | 0.395 | 14.2 | 30.52 | 13 | -- | -- |
| 396.82 | 0.928 | 3.19 | 0.608 | -- | 1.24 | -- | 2.08 | 0.297 | -- | 24.3 | 249 | -- | -- |
| 416.7 | 0.957 | 3.21 | 0.658 | 0.139 | -- | 0.0201 | -- | 0.155 | 14.1 | -- | -- | -- | -- |
| 416.7 | 0.956 | 3.21 | 0.658 | 0.139 | -- | -- | -- | 0.155 | 14.1 | -- | -- | -- | -- |
| 404.03 | 0.936 | 3.17 | 0.888 | -- | 0.961 | -- | -- | 0.326 | -- | 24.5 | 260 | -- | -- |
| 416.79 | 0.956 | 3.19 | -- | 0.417 | 0.88 | -- | -- | 0.222 | 14.1 | 30.52 | 13 | -- | -- |
| 417.85 | 0.955 | 3.21 | 0.653 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 428.12 | 0.968 | 3.22 | -- | 0.126 | -- | -- | -- | 0.0819 | 14 | -- | -- | -- | -- |
| 422.94 | 0.958 | 3.2 | -- | -- | 0.571 | -- | -- | 0.192 | -- | 26.38 | 177 | -- | -- |
| 429.08 | 0.967 | 3.23 | -- | -- | -- | -- | -- | 0.0795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 380.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 5 | 383.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 6 | 383.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 10 | 383.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 15 |
| 15 | 384.13 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 2 |
| 34 | 385.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 35 | 385.16 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 1 |
| 39 | 385.16 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 60 | 385.33 | temperature | 25 | 90 | < th | dose dependent | sin | 21 | NA |
| 93 | 386.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 98 | 386.85 | humidity | 90 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 113 | 387.37 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 116 | 387.55 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 127 | 387.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 128 | 387.93 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 132 | 387.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 136 | 388.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 160 | 388.49 | humidity | 90 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 178 | 388.86 | humidity | 90 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 187 | 389.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 195 | 389.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 198 | 389.20 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 204 | 389.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 206 | 389.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 207 | 389.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 222 | 389.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 223 | 389.47 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 230 | 389.54 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 16 |
| 239 | 389.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 251 | 389.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 260 | 389.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 271 | 389.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 293 | 390.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 6 |
| 330 | 390.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 336 | 390.40 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 341 | 390.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 344 | 390.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 362 | 390.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 420 | 390.84 | temperature | 20 | 90 | > th | dose independent | sin | 22 | NA |
| 422 | 390.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 427 | 390.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 446 | 391.02 | humidity | 90 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 447 | 391.02 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 462 | 391.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 466 | 391.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 469 | 391.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 477 | 391.15 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 16 |
| 481 | 391.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 488 | 391.21 | temperature | 20 | 90 | < th | dose independent | sin | 22 | NA |
| 506 | 391.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 507 | 391.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 508 | 391.27 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 541 | 391.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 582 | 391.54 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 14 |
| 618 | 391.63 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 652 | 391.75 | temperature | 20 | 30 | < th | dose independent | rect. | 18 | 4 |
| 670 | 391.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 673 | 391.80 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 20 |
| 686 | 391.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 701 | 391.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 702 | 391.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 753 | 391.96 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 7 |
| 765 | 391.97 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 20 |
| 782 | 392.00 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 798 | 392.05 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 16 |
| 885 | 392.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 916 | 392.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 938 | 392.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 982 | 392.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |