BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0129700 Os11g0129700|AK112088
         (208 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0129700  Similar to AP2-1 protein (Fragment)                 249   1e-66
Os12g0126300  Similar to AP2-1 protein (Fragment)                  76   2e-14

>Os11g0129700 Similar to AP2-1 protein (Fragment)
          Length = 208

 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 130/170 (76%)

Query: 39  CKRRARPRTDKSTGKAKRPKKESKEVVDPSSNXXXXXXXXKRSSIYRGVTRYASLHGIGG 98
           CKRRARPRTDKSTGKAKRPKKESKEVVDPSSN        KRSSIYRGVTRYASLHGIGG
Sbjct: 39  CKRRARPRTDKSTGKAKRPKKESKEVVDPSSNGGGGGGGGKRSSIYRGVTRYASLHGIGG 98

Query: 99  LADLRPICGTRIAPLHFRTRRKGGKSIWGLMIVKRQLLVHMTLQLLSTGVLRQCSISHWX 158
           LADLRPICGTRIAPLHFRTRRKGGKSIWGLMIVKRQLLVHMTLQLLSTGVLRQCSISHW 
Sbjct: 99  LADLRPICGTRIAPLHFRTRRKGGKSIWGLMIVKRQLLVHMTLQLLSTGVLRQCSISHWR 158

Query: 159 XXXXXXXXXXXXXXXSTWXXXXXXXXXXXXXXXXTEALPGITTMGGGRHG 208
                          STW                TEALPGITTMGGGRHG
Sbjct: 159 NMRRRGRRWRVCRGRSTWPPSAAGAAVSPGVSPSTEALPGITTMGGGRHG 208



>Os12g0126300 Similar to AP2-1 protein (Fragment)
          Length = 443

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 43/52 (82%), Gaps = 3/52 (5%)

Query: 39 CKRRARPRTDKSTGKAKRPKKESKEVVDPSSNXXXXXXXXKRSSIYRGVTRY 90
          CKRRARPRT+KSTGKAKRPKKESKEV DPSSN        KRSSIYRGVTR+
Sbjct: 39 CKRRARPRTEKSTGKAKRPKKESKEVADPSSN---GGGGGKRSSIYRGVTRH 87



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,668,974
Number of extensions: 140403
Number of successful extensions: 289
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)