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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0129700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AP2-1 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0443) R2 : 0.00341
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0933) R2dN8 : 0.00441 R2N8 : 0.00341
σ : 0.834
deviance : 319.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.15 0.8 4.24 -0.586 0.358 0.723 1.47 -3.08 -0.351 8.81 18.36 10 -- --
297.97 0.804 4.19 -0.104 0.357 0.905 1.38 -- -0.23 7.33 8.157 2 -- --
296.73 0.808 4.23 -0.414 0.354 0.712 -- -2.34 -0.316 8.57 18.36 10 -- --
302.45 0.815 4.18 -0.0375 0.366 0.715 -- -- -0.206 8.69 14.95 9 -- --
303.71 0.816 4.24 -0.439 -- 0.773 -- -2.43 -0.326 -- 18.36 10 -- --
305.86 0.82 4.16 0.0707 0.442 -- 0.715 -- -0.108 9.85 -- -- -- --
307.47 0.821 4.16 0.101 0.439 -- -- -- -0.104 10.6 -- -- -- --
309.89 0.823 4.19 -0.0447 -- 0.703 -- -- -0.213 -- 17.6 3 -- --
302.47 0.814 4.18 -- 0.367 0.67 -- -- -0.2 8.74 15.85 9 -- --
319.31 0.835 4.17 0.0935 -- -- -- -- -0.106 -- -- -- -- --
307.74 0.821 4.16 -- 0.438 -- -- -- -0.116 10.5 -- -- -- --
309.93 0.82 4.19 -- -- 0.685 -- -- -0.207 -- 17.6 2 -- --
319.54 0.834 4.17 -- -- -- -- -- -0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.27 humidity 90 14400 > th dose independent rect. 5 3
4 284.07 humidity 90 14400 < th dose independent rect. 6 2
8 284.58 humidity 90 14400 > th dose dependent rect. 5 5
10 284.63 humidity 90 14400 > th dose dependent rect. 2 19
12 284.66 humidity 90 14400 > th dose dependent rect. 3 7
19 284.77 radiation 20 4320 < th dose independent rect. 7 1
28 284.92 atmosphere 1005 43200 < th dose independent rect. 23 1
30 284.95 humidity 90 14400 > th dose dependent rect. 2 16
32 285.01 humidity 90 14400 > th dose dependent rect. 6 2
36 285.05 wind 9 14400 < th dose independent rect. 6 5
45 285.12 humidity 90 14400 > th dose dependent rect. 3 11
49 285.16 humidity 90 14400 > th dose independent rect. 19 15
52 285.20 atmosphere 1005 43200 < th dose independent rect. 1 1
53 285.20 humidity 90 14400 > th dose independent rect. 16 17
61 285.24 humidity 90 14400 > th dose dependent sin 3 NA
64 285.24 humidity 90 14400 > th dose dependent rect. 15 19
79 285.29 humidity 90 14400 > th dose dependent rect. 13 21
81 285.30 atmosphere 1005 43200 > th dose independent rect. 1 1
106 285.40 humidity 90 14400 > th dose dependent rect. 19 15
143 285.50 humidity 90 14400 > th dose dependent rect. 19 22
159 285.55 humidity 90 14400 > th dose dependent rect. 19 19
168 285.57 atmosphere 1005 43200 < th dose independent rect. 22 6
169 285.57 humidity 90 14400 > th dose dependent no NA NA
199 285.65 humidity 90 14400 > th dose dependent rect. 5 23
209 285.67 humidity 90 14400 > th dose dependent rect. 7 23
232 285.73 atmosphere 1005 43200 > th dose independent rect. 1 3
233 285.73 radiation 30 4320 < th dose independent rect. 16 17
241 285.76 humidity 90 14400 > th dose independent rect. 19 22
255 285.81 wind 3 43200 < th dose dependent rect. 24 7
261 285.83 humidity 90 14400 > th dose independent rect. 23 23
274 285.85 humidity 70 14400 > th dose dependent rect. 13 2
276 285.86 humidity 90 14400 > th dose independent rect. 2 23
277 285.86 humidity 90 14400 > th dose independent rect. 5 23
285 285.88 atmosphere 1005 43200 < th dose independent rect. 18 10
291 285.89 atmosphere 1005 43200 > th dose independent rect. 3 1
308 285.93 atmosphere 1005 43200 > th dose independent rect. 22 6
315 285.94 humidity 90 14400 > th dose independent no NA NA
318 285.95 wind 3 43200 < th dose independent rect. 12 1
324 285.96 humidity 90 14400 > th dose independent sin 5 NA
333 285.98 humidity 80 14400 > th dose independent rect. 8 8
352 286.02 atmosphere 1005 43200 > th dose independent rect. 18 11
359 286.04 radiation 20 4320 < th dose independent rect. 17 15
372 286.07 radiation 20 4320 < th dose independent rect. 3 5
377 286.08 humidity 90 14400 > th dose independent sin 12 NA
393 286.09 humidity 90 14400 > th dose dependent sin 11 NA
406 286.10 humidity 90 14400 > th dose dependent rect. 15 13
457 286.18 atmosphere 1005 43200 < th dose independent rect. 18 6
467 286.19 wind 3 43200 < th dose dependent rect. 21 10
470 286.20 wind 1 4320 < th dose dependent rect. 6 1
486 286.24 humidity 90 14400 > th dose independent rect. 16 12
509 286.28 humidity 80 14400 < th dose independent rect. 9 6
517 286.29 wind 3 43200 > th dose independent rect. 12 1
545 286.37 radiation 40 4320 < th dose dependent rect. 7 1
546 286.37 wind 3 43200 < th dose dependent rect. 3 10
553 286.39 humidity 90 14400 > th dose independent rect. 19 6
555 286.40 atmosphere 1005 43200 > th dose independent rect. 18 6
574 286.44 wind 3 43200 < th dose dependent rect. 21 12
587 286.47 radiation 1 4320 > th dose dependent rect. 7 1
609 286.51 wind 3 43200 < th dose dependent rect. 24 13
643 286.57 radiation 30 4320 > th dose independent rect. 16 17
653 286.58 radiation 1 14400 < th dose dependent rect. 7 1
655 286.59 radiation 20 4320 > th dose independent rect. 7 1
658 286.59 humidity 90 14400 > th dose independent rect. 19 9
665 286.60 wind 9 14400 > th dose independent rect. 7 4
710 286.65 atmosphere 1005 43200 > th dose independent rect. 23 1
730 286.67 atmosphere 1005 43200 > th dose independent rect. 19 2
761 286.71 humidity 90 14400 > th dose independent rect. 2 16
765 286.72 humidity 80 14400 > th dose independent rect. 13 2
792 286.74 atmosphere 1005 43200 < th dose independent sin 13 NA
804 286.76 atmosphere 1005 43200 > th dose independent sin 12 NA
805 286.76 wind 9 14400 > th dose independent rect. 9 2
821 286.77 wind 3 43200 < th dose dependent rect. 21 16
822 286.78 humidity 80 14400 > th dose independent rect. 10 1
863 286.84 wind 3 43200 < th dose dependent sin 8 NA
902 286.91 humidity 80 14400 < th dose independent rect. 13 2
924 286.94 wind 7 14400 > th dose dependent rect. 10 1
926 286.95 humidity 80 14400 > th dose independent rect. 9 3
956 287.00 humidity 80 14400 < th dose independent rect. 10 2