BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0129600 Os11g0129600|J065107M04
         (54 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0129600  Engulfment and cell motility, ELM domain conta...   112   7e-26
Os12g0126200  Engulfment and cell motility, ELM domain conta...    89   7e-19
Os03g0322800  Engulfment and cell motility, ELM domain conta...    76   5e-15

>Os11g0129600 Engulfment and cell motility, ELM domain containing protein
          Length = 54

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRFVSLIPSNDFRIYI 54
          QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRFVSLIPSNDFRIYI
Sbjct: 1  QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRFVSLIPSNDFRIYI 54



>Os12g0126200 Engulfment and cell motility, ELM domain containing protein
          Length = 320

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 44/47 (93%), Gaps = 3/47 (6%)

Query: 1   QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
           QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR   F+SL
Sbjct: 142 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSL 188



>Os03g0322800 Engulfment and cell motility, ELM domain containing protein
          Length = 317

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 42/47 (89%), Gaps = 3/47 (6%)

Query: 1   QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
           QDAL++LWRLAYP+R +PPLKS+LWKEMGWQ +DP+TDFR   F+SL
Sbjct: 139 QDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISL 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,168,300
Number of extensions: 63323
Number of successful extensions: 129
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 54
Length of database: 17,035,801
Length adjustment: 27
Effective length of query: 27
Effective length of database: 15,626,023
Effective search space: 421902621
Effective search space used: 421902621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)