BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0127700 Os11g0127700|AK103742
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0127700  Hypothetical protein                                566   e-162
Os12g0123900  Hypothetical protein                                543   e-155

>Os11g0127700 Hypothetical protein
          Length = 312

 Score =  566 bits (1459), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/290 (95%), Positives = 277/290 (95%)

Query: 23  PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82
           PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD
Sbjct: 23  PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82

Query: 83  VAVLFLGSKLQSSDISKDKQADSTLVDTLKNSFASSEFSMAFPYIAMSDDDKLEKSLLSG 142
           VAVLFLGSKLQSSDISKDKQADSTLVDTLKNSFASSEFSMAFPYIAMSDDDKLEKSLLSG
Sbjct: 83  VAVLFLGSKLQSSDISKDKQADSTLVDTLKNSFASSEFSMAFPYIAMSDDDKLEKSLLSG 142

Query: 143 FAENCNNGFGDNHITYTDTCSVSEDLNKHHNMDSIHGLVASQTKKNPSGQTDLIVFCDGG 202
           FAENCNNGFGDNHITYTDTCSVSEDLNKHHNMDSIHGLVASQTKKNPSGQTDLIVFCDGG
Sbjct: 143 FAENCNNGFGDNHITYTDTCSVSEDLNKHHNMDSIHGLVASQTKKNPSGQTDLIVFCDGG 202

Query: 203 FKDNTKSEGELLSELVTLLKKSGAKYTILYASQPFGLLENPSNLPLGRYLAEKTNTTKPG 262
           FKDNTKSEGELLSELVTLLKKSGAKYTILYASQPFGLLENPSNLPLGRYLAEKTNTTKPG
Sbjct: 203 FKDNTKSEGELLSELVTLLKKSGAKYTILYASQPFGLLENPSNLPLGRYLAEKTNTTKPG 262

Query: 263 RGKCDGECLVKSTLLEGSFXXXXXXXXXXXXXKCMMGIDTPSKFDAPPES 312
           RGKCDGECLVKSTLLEGSF             KCMMGIDTPSKFDAPPES
Sbjct: 263 RGKCDGECLVKSTLLEGSFVGIVLLIILISGLKCMMGIDTPSKFDAPPES 312



>Os12g0123900 Hypothetical protein
          Length = 312

 Score =  543 bits (1399), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/290 (90%), Positives = 272/290 (93%)

Query: 23  PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82
           PVMGPAFLWAP NYGFSSDE KE+V+YQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD
Sbjct: 23  PVMGPAFLWAPNNYGFSSDETKEMVYYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82

Query: 83  VAVLFLGSKLQSSDISKDKQADSTLVDTLKNSFASSEFSMAFPYIAMSDDDKLEKSLLSG 142
           VAVLFLGSKLQSSDISK+KQADSTLVD LKNSFASSEFSMAFPY+AMSDDDKLEKSLLSG
Sbjct: 83  VAVLFLGSKLQSSDISKEKQADSTLVDMLKNSFASSEFSMAFPYVAMSDDDKLEKSLLSG 142

Query: 143 FAENCNNGFGDNHITYTDTCSVSEDLNKHHNMDSIHGLVASQTKKNPSGQTDLIVFCDGG 202
           FAENCNNG G+NHITYTDTCSVSEDL KHH+MDSIHGLVASQTKKNPSGQTDL+VFCDGG
Sbjct: 143 FAENCNNGLGNNHITYTDTCSVSEDLKKHHDMDSIHGLVASQTKKNPSGQTDLVVFCDGG 202

Query: 203 FKDNTKSEGELLSELVTLLKKSGAKYTILYASQPFGLLENPSNLPLGRYLAEKTNTTKPG 262
           FKDNTKSEGELLSELVTLLKKSGAKYTILYASQP+GLLE+PSNLPLGRYLAEKTNTTKPG
Sbjct: 203 FKDNTKSEGELLSELVTLLKKSGAKYTILYASQPYGLLESPSNLPLGRYLAEKTNTTKPG 262

Query: 263 RGKCDGECLVKSTLLEGSFXXXXXXXXXXXXXKCMMGIDTPSKFDAPPES 312
           RGKCDGECLVKSTLLEGSF             KCMMGIDTPSKFDAPPES
Sbjct: 263 RGKCDGECLVKSTLLEGSFVGIVLLIILISGLKCMMGIDTPSKFDAPPES 312



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,615,510
Number of extensions: 372330
Number of successful extensions: 636
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)