BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0114200 Os11g0114200|AK106364
         (101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0114200  Hypothetical protein                                 81   1e-16
Os12g0114000  Hypothetical protein                                 73   4e-14

>Os11g0114200 Hypothetical protein
          Length = 101

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 43/72 (59%)

Query: 30  FFAHHGSCSRXXXXXXXXXXXXXXXKHESETASADXXXXXXXXXXXXXXLSWLRSMKPRG 89
           FFAHHGSCSR               KHESETASAD              LSWLRSMKPRG
Sbjct: 30  FFAHHGSCSRPLLLPSPTTPMQPQLKHESETASADTTTRTEEQVVQQQQLSWLRSMKPRG 89

Query: 90  RPQPSSPSKRTN 101
           RPQPSSPSKRTN
Sbjct: 90  RPQPSSPSKRTN 101



>Os12g0114000 Hypothetical protein
          Length = 99

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 30  FFAHHGSCSRXXXXXXXXXXXXXXXKHESETASADXXXXXXXXXXXXXXLSWLRSMKPRG 89
           FFAHHGSCSR               KHESETASAD              LSWLRSMKPRG
Sbjct: 30  FFAHHGSCSRPLPLPSPTPMQPQL-KHESETASADTTTTTEEQVMQQQ-LSWLRSMKPRG 87

Query: 90  RPQPSSPSKRTN 101
           RPQPSSPSKRTN
Sbjct: 88  RPQPSSPSKRTN 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.121    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,806,314
Number of extensions: 33344
Number of successful extensions: 90
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)