BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0113100 Os11g0113100|AK072567
         (271 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0113100  Dual specificity protein phosphatase domain co...   509   e-144
Os12g0112500  Hypothetical protein                                156   1e-38
Os08g0379300  PDZ/DHR/GLGF domain containing protein              108   3e-24

>Os11g0113100 Dual specificity protein phosphatase domain containing protein
          Length = 271

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/271 (90%), Positives = 245/271 (90%)

Query: 1   MAAMATAPCFPATPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXVFLCRSSTTGSSRMEDY 60
           MAAMATAPCFPATPGLP                          VFLCRSSTTGSSRMEDY
Sbjct: 1   MAAMATAPCFPATPGLPARGAVAARSRMAAGGSRSQRRRSSSGVFLCRSSTTGSSRMEDY 60

Query: 61  NTAMKRMMRNPYEYHHDLGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDK 120
           NTAMKRMMRNPYEYHHDLGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDK
Sbjct: 61  NTAMKRMMRNPYEYHHDLGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDK 120

Query: 121 DIEYWGIDFQTVVNRCKELGIKHIRRPAVDFDPDSLRTQLPKAVSSLEWAISEGKGRVYV 180
           DIEYWGIDFQTVVNRCKELGIKHIRRPAVDFDPDSLRTQLPKAVSSLEWAISEGKGRVYV
Sbjct: 121 DIEYWGIDFQTVVNRCKELGIKHIRRPAVDFDPDSLRTQLPKAVSSLEWAISEGKGRVYV 180

Query: 181 HCTAGLGRAPAVAIAYMFWFENMDLRTAYEKLTSKRPCGPNKRAIRAATYDLAKNDPHKE 240
           HCTAGLGRAPAVAIAYMFWFENMDLRTAYEKLTSKRPCGPNKRAIRAATYDLAKNDPHKE
Sbjct: 181 HCTAGLGRAPAVAIAYMFWFENMDLRTAYEKLTSKRPCGPNKRAIRAATYDLAKNDPHKE 240

Query: 241 SFDSLPEHAFEGIAGSERSLIQERVRALREA 271
           SFDSLPEHAFEGIAGSERSLIQERVRALREA
Sbjct: 241 SFDSLPEHAFEGIAGSERSLIQERVRALREA 271



>Os12g0112500 Hypothetical protein
          Length = 87

 Score =  156 bits (395), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 74  YHHDLGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDKDIEYWGIDFQTVV 133
           Y  ++GMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDKDIEYWGIDFQTVV
Sbjct: 7   YSWNVGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDKDIEYWGIDFQTVV 66

Query: 134 NRCKELGIKHIRRP 147
           NRCKELGIKHIRRP
Sbjct: 67  NRCKELGIKHIRRP 80



>Os08g0379300 PDZ/DHR/GLGF domain containing protein
          Length = 593

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 53  GSSRMEDYNTAMKRMMRNPYEYHHDLGMNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAF 112
           GS  +E+Y  A+ R     Y Y+H LGM Y+ I++ + VGS  Q   D+  L +   +  
Sbjct: 263 GSFPLEEYIKALDRAKGELY-YNHSLGMQYSKITEQIFVGSCLQTERDVKMLSETMGITA 321

Query: 113 ILCLQQDKDIEYWGIDFQTVVNRCKELGIKHIRRPAVDFDPDSLRTQLPKAVSSLEWAIS 172
           +L  Q + +   WGI+ + + N C+E  I  +  P  + D   LR +L   V  L   I 
Sbjct: 322 VLNFQSESERTNWGINSEAINNSCRENNILMVNYPIREVDSMDLRKKLSFCVGLLLRLIR 381

Query: 173 EGKGRVYVHCTAGLGRAPAVAIAYMFWFENMDLRTAYEKLTSKRPCGPNKRAIRAATYD- 231
           +   R+YV CT G  R+PA  IAY+ W ++  L  A++ +T    C P++ AI  AT+D 
Sbjct: 382 KNY-RIYVTCTTGYDRSPACVIAYLHWVQDTPLHIAHKFITGLHSCRPDRAAIVWATWDL 440

Query: 232 --LAKNDPHKESFDSLPEHAFEGIAGSER 258
             L +N  H    D  P H+   +  S R
Sbjct: 441 IALVENGRH----DGTPTHSVCFVWNSGR 465



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,557,507
Number of extensions: 336383
Number of successful extensions: 641
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 3
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)