BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0102600 Os11g0102600|AK071448
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0102200 Similar to Tonneau 1b 505 e-143
Os11g0102600 Lissencephaly type-1-like homology motif domai... 505 e-143
>Os12g0102200 Similar to Tonneau 1b
Length = 259
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/259 (95%), Positives = 247/259 (95%)
Query: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS
Sbjct: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKXX 120
CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNK
Sbjct: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKSG 120
Query: 121 XXXXXXXXXXPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
PMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS
Sbjct: 121 AEGSRSAESGPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
Query: 181 SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL 240
SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL
Sbjct: 181 SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL 240
Query: 241 DRKARNLTTSWRHPGDGAE 259
DRKARNLTTSWRHPGDGAE
Sbjct: 241 DRKARNLTTSWRHPGDGAE 259
>Os11g0102600 Lissencephaly type-1-like homology motif domain containing protein
Length = 259
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/259 (95%), Positives = 247/259 (95%)
Query: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS
Sbjct: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKXX 120
CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNK
Sbjct: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKSG 120
Query: 121 XXXXXXXXXXPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
PMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS
Sbjct: 121 AEGSRSAESGPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
Query: 181 SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL 240
SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL
Sbjct: 181 SSVTGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQL 240
Query: 241 DRKARNLTTSWRHPGDGAE 259
DRKARNLTTSWRHPGDGAE
Sbjct: 241 DRKARNLTTSWRHPGDGAE 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,273,201
Number of extensions: 395120
Number of successful extensions: 1348
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)