Os12g0102200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tonneau 1b.
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Os12g0102200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tonneau 1b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.64 | 0.203 | 12.5 | -0.397 | 0.726 | 0.577 | -0.22 | -0.842 | 0.126 | 1.35 | 19.5 | 1866 | -- | -- |
| 19.54 | 0.206 | 12.4 | -0.381 | 0.723 | 0.829 | -0.219 | -- | 0.133 | 1.27 | 18.44 | 3266 | -- | -- |
| 18.83 | 0.202 | 12.5 | -0.39 | 0.724 | 0.572 | -- | -0.839 | 0.127 | 1.34 | 19.49 | 1882 | -- | -- |
| 19.71 | 0.207 | 12.4 | -0.382 | 0.72 | 0.834 | -- | -- | 0.132 | 1.28 | 18.42 | 3332 | -- | -- |
| 46.94 | 0.319 | 12.5 | -0.384 | -- | 0.577 | -- | -0.684 | 0.0793 | -- | 21.2 | 970 | -- | -- |
| 28.06 | 0.248 | 12.4 | 0.00712 | 0.73 | -- | -0.194 | -- | 0.283 | 1.3 | -- | -- | -- | -- |
| 28.21 | 0.249 | 12.4 | 0.0139 | 0.73 | -- | -- | -- | 0.284 | 1.3 | -- | -- | -- | -- |
| 48.22 | 0.323 | 12.4 | -0.2 | -- | 0.62 | -- | -- | 0.126 | -- | 21.36 | 979 | -- | -- |
| 21.47 | 0.216 | 12.4 | -- | 0.742 | 0.664 | -- | -- | 0.197 | 1.28 | 18.9 | 1761 | -- | -- |
| 61.13 | 0.365 | 12.4 | 0.0423 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 28.22 | 0.248 | 12.4 | -- | 0.731 | -- | -- | -- | 0.282 | 1.3 | -- | -- | -- | -- |
| 49.16 | 0.327 | 12.4 | -- | -- | 0.559 | -- | -- | 0.152 | -- | 21.31 | 960 | -- | -- |
| 61.18 | 0.365 | 12.4 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.35 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 18.38 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 3 | 18.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 15 | 18.57 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 16 | 18.62 | temperature | 25.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 17 | 18.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 23 | 18.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 26 | 18.71 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 27 | 18.72 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 28 | 18.72 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 29 | 18.72 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 32 | 18.74 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 40 | 18.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 42 | 18.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 43 | 18.80 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 44 | 18.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 45 | 18.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 49 | 18.82 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 51 | 18.82 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 61 | 18.84 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 63 | 18.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 77 | 18.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 79 | 18.88 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 94 | 18.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 110 | 18.96 | temperature | 25.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 112 | 18.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 132 | 19.00 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 143 | 19.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 146 | 19.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 151 | 19.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 153 | 19.03 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 154 | 19.03 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 155 | 19.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 158 | 19.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 159 | 19.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 177 | 19.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 11 | 18 |
| 178 | 19.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 188 | 19.08 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 17 |
| 206 | 19.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 210 | 19.10 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 211 | 19.10 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 219 | 19.11 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 251 | 19.14 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 257 | 19.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 263 | 19.15 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 279 | 19.16 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 288 | 19.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 289 | 19.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 294 | 19.17 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 323 | 19.19 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 353 | 19.20 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 374 | 19.21 | temperature | 20.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 379 | 19.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 390 | 19.21 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 403 | 19.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 429 | 19.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 466 | 19.25 | temperature | 20.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 480 | 19.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 501 | 19.26 | temperature | 20.0 | 720 | > th | dose independent | sin | 16 | NA |
| 558 | 19.28 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 602 | 19.30 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 677 | 19.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 678 | 19.33 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 679 | 19.33 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 680 | 19.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 720 | 19.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 738 | 19.35 | temperature | 20.0 | 270 | > th | dose independent | sin | 12 | NA |
| 764 | 19.36 | temperature | 20.0 | 270 | < th | dose independent | sin | 12 | NA |
| 784 | 19.37 | temperature | 20.0 | 720 | < th | dose independent | sin | 16 | NA |
| 786 | 19.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 802 | 19.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 808 | 19.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 822 | 19.38 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 840 | 19.38 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 859 | 19.39 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 869 | 19.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 883 | 19.40 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 19 |
| 898 | 19.40 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 902 | 19.41 | temperature | 20.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 904 | 19.41 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 936 | 19.41 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 951 | 19.42 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 953 | 19.42 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 969 | 19.43 | temperature | 20.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 970 | 19.43 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 988 | 19.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 5 |