BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0102200 Os12g0102200|AK103950
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55005.1 | chr3:20384131-20386193 FORWARD LENGTH=258 317 5e-87
AT3G55000.1 | chr3:20381612-20383577 FORWARD LENGTH=261 309 8e-85
>AT3G55005.1 | chr3:20384131-20386193 FORWARD LENGTH=258
Length = 257
Score = 317 bits (811), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/259 (62%), Positives = 197/259 (76%), Gaps = 11/259 (4%)
Query: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
MDDY REMM+LKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRV+EN++G PALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGLPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKXX 120
CNDRA+QLHASPSGRLL+AL+ EYL+WAQL+HT+KVY PECN KD WK+E++DFS
Sbjct: 61 CNDRARQLHASPSGRLLSALICEYLDWAQLNHTLKVYQPECNSAKDSWKSEIRDFSINNG 120
Query: 121 XXXXXXXXXXPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
P+LLDVLEG+LK+EN++Q M G+ RR +ES +L +TR PP
Sbjct: 121 YELNRNEDSRPLLLDVLEGFLKFENMTQV-MGGSSRRESETESSLSL-----DTRNPPRR 174
Query: 181 SSVT-GLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQ 239
SS + LP R + +SQ S G++ S RKDE NWRYD +D+ EEV+RAS+ALEN+Q
Sbjct: 175 SSASDSLPHQRRSVSASQAS----GAATSGYRKDESNWRYDTEDMPEEVMRASTALENLQ 230
Query: 240 LDRKARNLTTSWRHPGDGA 258
LDRK RNLT+SWR+ DG
Sbjct: 231 LDRKTRNLTSSWRNVKDGT 249
>AT3G55000.1 | chr3:20381612-20383577 FORWARD LENGTH=261
Length = 260
Score = 309 bits (792), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 160/259 (61%), Positives = 193/259 (74%), Gaps = 7/259 (2%)
Query: 1 MDDYAREMMELKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVVENDDGGNPALLGS 60
MDDY REMM+LKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRV+EN++G PALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALVSEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKXX 120
CNDRA++LHASPSGRLL+AL+ EYL+WAQL+HT+ VY PE NLPKD WK+EL+DF++
Sbjct: 61 CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120
Query: 121 XXXXXXXXXXPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSS 180
P+LLDVLEG+LK+E+++Q M + RR ++ +R PP
Sbjct: 121 FELNRNGDSGPLLLDVLEGFLKFESMTQG-MGSSSRR-----DSETESSSSLESRNPPRR 174
Query: 181 SSVT-GLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQ 239
SS + LPP RP+ +SQ SDRR G S S RKDE+NWR D EEV RAS+ALEN+Q
Sbjct: 175 SSASDSLPPQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQDTHEEVTRASAALENLQ 234
Query: 240 LDRKARNLTTSWRHPGDGA 258
LDRK RNLT+SWR+ DG
Sbjct: 235 LDRKTRNLTSSWRNVRDGT 253
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,613,645
Number of extensions: 231863
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)