Os11g0102600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os11g0102600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.25 | 0.189 | 12.3 | -0.344 | 0.784 | 0.313 | -0.0689 | -1.09 | 0.166 | 1.74 | 19.1 | 1918 | -- | -- |
| 17.58 | 0.195 | 12.3 | -0.225 | 0.784 | 0.514 | -0.0401 | -- | 0.203 | 1.67 | 18.6 | 3261 | -- | -- |
| 16.26 | 0.188 | 12.3 | -0.342 | 0.784 | 0.312 | -- | -1.1 | 0.167 | 1.74 | 19.12 | 1915 | -- | -- |
| 17.41 | 0.194 | 12.3 | -0.296 | 0.779 | 0.614 | -- | -- | 0.181 | 1.76 | 18.4 | 3334 | -- | -- |
| 50.51 | 0.331 | 12.3 | -0.354 | -- | 0.395 | -- | -0.921 | 0.145 | -- | 20.7 | 962 | -- | -- |
| 22.26 | 0.221 | 12.3 | -0.000658 | 0.785 | -- | -0.0726 | -- | 0.286 | 1.71 | -- | -- | -- | -- |
| 22.28 | 0.221 | 12.3 | 0.00166 | 0.785 | -- | -- | -- | 0.287 | 1.72 | -- | -- | -- | -- |
| 51.98 | 0.336 | 12.3 | -0.241 | -- | 0.78 | -- | -- | 0.209 | -- | 18.7 | 947 | -- | -- |
| 18.87 | 0.202 | 12.3 | -- | 0.777 | 0.465 | -- | -- | 0.234 | 1.69 | 18.1 | 3236 | -- | -- |
| 59.75 | 0.361 | 12.3 | 0.0336 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 22.28 | 0.221 | 12.3 | -- | 0.785 | -- | -- | -- | 0.287 | 1.72 | -- | -- | -- | -- |
| 52.89 | 0.339 | 12.3 | -- | -- | 0.695 | -- | -- | 0.244 | -- | 18.32 | 997 | -- | -- |
| 59.78 | 0.361 | 12.3 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 2 | 15.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 8 | 15.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 9 | 15.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 22 | 15.46 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 28 | 15.48 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 35 | 15.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 55 | 15.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 64 | 15.54 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 73 | 15.55 | temperature | 25.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 75 | 15.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 87 | 15.56 | temperature | 25.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 176 | 15.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 177 | 15.64 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 185 | 15.65 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 196 | 15.66 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 197 | 15.66 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 210 | 15.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 227 | 15.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 233 | 15.70 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 244 | 15.71 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 249 | 15.72 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 251 | 15.72 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 255 | 15.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 261 | 15.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 278 | 15.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 302 | 15.76 | temperature | 20.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 304 | 15.76 | temperature | 20.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 306 | 15.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 320 | 15.77 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 321 | 15.77 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 322 | 15.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 324 | 15.77 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 336 | 15.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 340 | 15.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 361 | 15.79 | wind | 7.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 372 | 15.79 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 373 | 15.79 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 391 | 15.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 406 | 15.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 426 | 15.82 | wind | 7.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 433 | 15.82 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 15 |
| 441 | 15.82 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 467 | 15.84 | wind | 7.0 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 513 | 15.87 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 536 | 15.87 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 574 | 15.89 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 587 | 15.89 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 601 | 15.90 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 632 | 15.91 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 695 | 15.93 | temperature | 20.0 | 720 | < th | dose independent | sin | 16 | NA |
| 698 | 15.93 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 716 | 15.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 728 | 15.94 | temperature | 20.0 | 720 | > th | dose independent | sin | 16 | NA |
| 743 | 15.94 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 840 | 15.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 872 | 15.97 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 913 | 15.98 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 952 | 15.99 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 959 | 15.99 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 11 |
| 972 | 15.99 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |