BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0573800 Os10g0573800|J065135F02
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0573800  Mitochondrial substrate carrier family protein      238   6e-64
Os10g0573700  Similar to Mitochondrial carnitine/acylcarniti...   192   7e-50
Os11g0423800  Similar to Mitochondrial basic amino acid carrier    79   7e-16
AK107685                                                           65   2e-11

>Os10g0573800 Mitochondrial substrate carrier family protein
          Length = 131

 Score =  238 bits (608), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 120/131 (91%)

Query: 1   MGDVVKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATE 60
           MGDVVKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATE
Sbjct: 1   MGDVVKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATE 60

Query: 61  GPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSEPGQPLTVNQQXXXXXXXXXXXSF 120
           GPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSEPGQPLTVNQQ           SF
Sbjct: 61  GPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSEPGQPLTVNQQVVAGAGAGVAVSF 120

Query: 121 LACPTELIKCR 131
           LACPTELIKCR
Sbjct: 121 LACPTELIKCR 131



>Os10g0573700 Similar to Mitochondrial carnitine/acylcarnitine carrier-like
           protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine
           translocase-like protein) (CAC-like protein)
          Length = 316

 Score =  192 bits (487), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 113/131 (86%)

Query: 1   MGDVVKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATE 60
           MGDV KDL AGTVGGAA L+VGHPFDTIKVKLQSQPTP PGQ PK+AGA+DAVKQT+A E
Sbjct: 1   MGDVAKDLTAGTVGGAAQLVVGHPFDTIKVKLQSQPTPPPGQPPKFAGAMDAVKQTLAAE 60

Query: 61  GPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSEPGQPLTVNQQXXXXXXXXXXXSF 120
           GPRGLYKGMGAPLATVAAFNALLFTVRGQMEA+LRSEPG PLTV+QQ           SF
Sbjct: 61  GPRGLYKGMGAPLATVAAFNALLFTVRGQMEAVLRSEPGAPLTVSQQVVAGAGAGVAVSF 120

Query: 121 LACPTELIKCR 131
           LACPTELIKCR
Sbjct: 121 LACPTELIKCR 131



>Os11g0423800 Similar to Mitochondrial basic amino acid carrier
          Length = 152

 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 2   GDVVKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATEG 61
           GD  K+  AG   G A + VGHPFDT+KVKLQ+  T A G+   Y  A    ++ +  EG
Sbjct: 14  GDAAKEYAAGCAAGIAQVAVGHPFDTVKVKLQAHNTTAHGKV--YRNAFHCTRRILVEEG 71

Query: 62  PRGLYKGMGAPLATVAAFNALLFTVRGQMEALL--RSEPGQPLTVNQQXXXXXXXXXXXS 119
            RGLYKG  +    +A  ++L F    Q + LL  +SE G+P    Q            +
Sbjct: 72  MRGLYKGASSSFIGIALESSLFFGTYSQAKQLLKGKSEDGRP----QLQVIIPSAACSGA 127

Query: 120 FLAC---PTELIK 129
            ++C   PTEL+K
Sbjct: 128 LISCILTPTELMK 140



>AK107685 
          Length = 311

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 6/80 (7%)

Query: 5  VKDLVAGTVGGAANLIVGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATEGPRG 64
          VK  ++G  GG  +++VGHPFD  K +LQ   T A G    Y G +D V++TI  +G +G
Sbjct: 25 VKSFLSGGFGGVCSVLVGHPFDLTKTRLQ---TAANGT---YTGGLDVVRKTIKADGIKG 78

Query: 65 LYKGMGAPLATVAAFNALLF 84
          +Y+GMG PL  V    AL F
Sbjct: 79 MYRGMGPPLVGVTPIFALSF 98



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,120,576
Number of extensions: 152812
Number of successful extensions: 565
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 5
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)