BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0565300 Os10g0565300|AK107429
(776 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0565300 Conserved hypothetical protein 1573 0.0
Os02g0470400 Cytochrome cd1-nitrite reductase-like, C-termi... 338 7e-93
>Os10g0565300 Conserved hypothetical protein
Length = 776
Score = 1573 bits (4074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/776 (97%), Positives = 760/776 (97%)
Query: 1 MQNDTDTXXXXXXXXXXXXXXXXSLIDHKPRELLYLHLQKLFISYMTGYNSGTTSRFKLI 60
MQNDTDT SLIDHKPRELLYLHLQKLFISYMTGYNSGTTSRFKLI
Sbjct: 1 MQNDTDTGAGLLELIVELGVVGVSLIDHKPRELLYLHLQKLFISYMTGYNSGTTSRFKLI 60
Query: 61 IGHMQLDNQLPLSIMPVALATESMPDSNHPVFKANIAVSNVTSNGIQVYPHVYIRVTDQT 120
IGHMQLDNQLPLSIMPVALATESMPDSNHPVFKANIAVSNVTSNGIQVYPHVYIRVTDQT
Sbjct: 61 IGHMQLDNQLPLSIMPVALATESMPDSNHPVFKANIAVSNVTSNGIQVYPHVYIRVTDQT 120
Query: 121 WRLNIHEPIIWALVDFYSNLRFVSTNNISTVTEVDPEIRIELVDISEIRLKISLETAPTQ 180
WRLNIHEPIIWALVDFYSNLRFVSTNNISTVTEVDPEIRIELVDISEIRLKISLETAPTQ
Sbjct: 121 WRLNIHEPIIWALVDFYSNLRFVSTNNISTVTEVDPEIRIELVDISEIRLKISLETAPTQ 180
Query: 181 RPRGVLGIWSPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHL 240
RPRGVLGIWSPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHL
Sbjct: 181 RPRGVLGIWSPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHL 240
Query: 241 IFSVDFLGVTKSTLSSLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQG 300
IFSVDFLGVTKSTLSSLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQG
Sbjct: 241 IFSVDFLGVTKSTLSSLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQG 300
Query: 301 LAFGVSGVLRKPVESARQYGAIGIAHGLGRAFVGFIVQPLSGAFDFFSLTVDGISASFMR 360
LAFGVSGVLRKPVESARQYGAIGIAHGLGRAFVGFIVQPLSGAFDFFSLTVDGISASFMR
Sbjct: 301 LAFGVSGVLRKPVESARQYGAIGIAHGLGRAFVGFIVQPLSGAFDFFSLTVDGISASFMR 360
Query: 361 CVDILNNKHVPQRIRDPRAIHRDGIIREYDKVQAAGQMALYLAEASRYFACTDLFREPSK 420
CVDILNNKHVPQRIRDPRAIHRDGIIREYDKVQAAGQMALYLAEASRYFACTDLFREPSK
Sbjct: 361 CVDILNNKHVPQRIRDPRAIHRDGIIREYDKVQAAGQMALYLAEASRYFACTDLFREPSK 420
Query: 421 YAWSDYYEDHFIVQNQKVALVTNKRVILLQCVDLDKMDKKPSKILWDVPWEDVLALELAK 480
YAWSDYYEDHFIVQNQKVALVTNKRVILLQCVDLDKMDKKPSKILWDVPWEDVLALELAK
Sbjct: 421 YAWSDYYEDHFIVQNQKVALVTNKRVILLQCVDLDKMDKKPSKILWDVPWEDVLALELAK 480
Query: 481 AGYQRPSHVIIHLKNFRRSENFVRLIKCNVDEEHEPQALLLCSSIRKMWRSHQADMKVVP 540
AGYQRPSHVIIHLKNFRRSENFVRLIKCNVDEEHEPQALLLCSSIRKMWRSHQADMKVVP
Sbjct: 481 AGYQRPSHVIIHLKNFRRSENFVRLIKCNVDEEHEPQALLLCSSIRKMWRSHQADMKVVP 540
Query: 541 LKVPGGQHDVYFAFDEDMREFHSFARPLLSPRGAASNVEERLINDTVNFQNMWSSEQEIR 600
LKVPGGQHDVYFAFDEDMREFHSFARPLLSPRGAASNVEERLINDTVNFQNMWSSEQEIR
Sbjct: 541 LKVPGGQHDVYFAFDEDMREFHSFARPLLSPRGAASNVEERLINDTVNFQNMWSSEQEIR 600
Query: 601 SRCKLLSKQVADDGRVFSIWRPLCPSGYVSIGDIAHVGIHPPHVAAVYKNVGGNFALPLG 660
SRCKLLSKQVADDGRVFSIWRPLCPSGYVSIGDIAHVGIHPPHVAAVYKNVGGNFALPLG
Sbjct: 601 SRCKLLSKQVADDGRVFSIWRPLCPSGYVSIGDIAHVGIHPPHVAAVYKNVGGNFALPLG 660
Query: 661 YDLVWRNCGEDYRNPVSIWFPRPPEGYVALGCVAVSAFEEPPLDSAFCVSERFAEDAVYE 720
YDLVWRNCGEDYRNPVSIWFPRPPEGYVALGCVAVSAFEEPPLDSAFCVSERFAEDAVYE
Sbjct: 661 YDLVWRNCGEDYRNPVSIWFPRPPEGYVALGCVAVSAFEEPPLDSAFCVSERFAEDAVYE 720
Query: 721 EQIVWASSDAYPWGCYVYQVQSKSLQFMAMRRPKEECELKPKKVSESYAQQALERS 776
EQIVWASSDAYPWGCYVYQVQSKSLQFMAMRRPKEECELKPKKVSESYAQQALERS
Sbjct: 721 EQIVWASSDAYPWGCYVYQVQSKSLQFMAMRRPKEECELKPKKVSESYAQQALERS 776
>Os02g0470400 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain
containing protein
Length = 2989
Score = 338 bits (868), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 194/534 (36%), Positives = 316/534 (59%), Gaps = 18/534 (3%)
Query: 24 SLIDHKPRELLYLHLQKLFISYMTGYNSGTTSRFKLIIGHMQLDNQLPLSIMPVALATES 83
S+IDH P E+L+L +Q+L ++Y +G SG +R K+ + +Q+DNQLP +MPV +
Sbjct: 2401 SIIDHMPEEILFLSVQQLLLAYSSGMGSGI-NRLKMQMHWIQVDNQLPFVLMPVLFCPQR 2459
Query: 84 MPDSNHPVFKANIAVSNVTSNGIQVYPHVYIRVTDQ-TWRLNIHEPIIWALVDFYSNLRF 142
M + + + K ++ + S VYP++ ++V + + +NIHEPIIW L + NL+F
Sbjct: 2460 MENQSDYIIKFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNIHEPIIWRLHEMIQNLKF 2519
Query: 143 VS-TNNISTVTEVDPEIRIELVDISEIRLKISLETAPTQRPRGVLGIWSPVLSAVGNALK 201
+++ S+ VDP ++I L++ISEIR ++S+ +PTQRPRGVLG WS +++A+GN
Sbjct: 2520 DRISSSESSAVSVDPILKIGLLNISEIRFRVSMAMSPTQRPRGVLGFWSSLMTALGNMEH 2579
Query: 202 IQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHLIFSVDFLGVTKSTLSSLSKGF 261
+ V + + MR+S+++ + + I++D++ PL L+ VD LG S LS++SKG
Sbjct: 2580 MPVRIAQRYREELCMRQSALMSSAMSNIQKDILSQPLQLLSGVDILGNASSALSNMSKGI 2639
Query: 262 AELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQGLAFGVSGVLRKPVESARQYGA 321
A LS D +F+Q R +Q S+ + GD + G A A+G+ GV+G+L KP+E A+ G
Sbjct: 2640 AALSMDKKFIQGRMRQD-SKGVEDFGDVIRDGGGALAKGIFRGVTGILTKPIEGAKSSGV 2698
Query: 322 IGIAHGLGRAFVGFIVQPLSGAFDFFSLTVDGISASFMRCVDILNNKHVPQRIRDPRAIH 381
G G+G+ +G QP+SG D S T +G +A M+ + + R R PRAI
Sbjct: 2699 EGFVQGVGKGLIGAAAQPVSGVLDLLSKTTEGANAVKMKISSAIMAEEQLARRRLPRAIG 2758
Query: 382 RDGIIREYDKVQAAGQMALYLAEASRYFACTDLFREPSKYAWSDYYEDHFIVQNQKVALV 441
D ++ YD +AAGQ L LAE + + DLF+ K+A +D YEDHF++ K+ L+
Sbjct: 2759 GDSLLYPYDDHKAAGQAILQLAEYATFLGQVDLFKVRGKFASTDAYEDHFMLPKGKILLI 2818
Query: 442 TNKRVILLQCVDLDKMD----KKPSKILWDVPWEDVLALELA----KAGYQRPSHVIIHL 493
T++RV+LLQ + + K P ++WDV W+D++ +E+ A PS +I++L
Sbjct: 2819 THRRVLLLQVPMMTQRKFSPAKDPCSVIWDVLWDDLVTVEMTHGKKDAPGSLPSKLILYL 2878
Query: 494 K-NFRRSENFVRLIKCNVDEEHEPQALLLCSSIRKMWRSH--QADMKVVPLKVP 544
K S VRL+KCN + QA L+ SSI ++++ ++ +++ KVP
Sbjct: 2879 KAKPTNSREVVRLVKCNRGSD---QATLIYSSIDGAYKAYGPKSTKELLRWKVP 2929
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 2/147 (1%)
Query: 611 ADDGRVFSIWRPLCPSGYVSIGDIAHVGIHPPHVAAVYKNVGGNFA-LPLGYDLVWRNCG 669
D R FSIWRP+ G+ S+GD G PP + ++K + P + V +
Sbjct: 1187 GDTKRPFSIWRPIPRFGFSSVGDCITEGFEPPTLGILFKCDSAIVSERPTQFKKVAQIDR 1246
Query: 670 EDYRNPVSIWFPRPPEGYVALGCVAVSAFEEPPLDSAFCVSERFAEDA-VYEEQIVWASS 728
+ + W+P PP GY +LGCVA E P DS C A + E+ I +SS
Sbjct: 1247 KGSDEILFFWYPVPPPGYASLGCVATKTDEMPSNDSVCCPKMGLVNHANILEDPISRSSS 1306
Query: 729 DAYPWGCYVYQVQSKSLQFMAMRRPKE 755
P +++V ++ F+A K+
Sbjct: 1307 SKGPNCWSIWKVSNQGCTFLATSDTKK 1333
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,274,003
Number of extensions: 1110644
Number of successful extensions: 2045
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 3
Length of query: 776
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 667
Effective length of database: 11,344,475
Effective search space: 7566764825
Effective search space used: 7566764825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)