Os02g0470400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.
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Os02g0470400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.73 | 0.285 | 9.98 | 0.717 | 0.446 | -0.8 | -0.00688 | 2.82 | 0.611 | 4.05 | 25.3 | 4460 | -- | -- |
| 37.52 | 0.285 | 10 | 0.731 | 0.443 | -1.04 | 0.133 | -- | 0.636 | 3.72 | 19.26 | 22334 | -- | -- |
| 36.49 | 0.281 | 9.98 | 0.736 | 0.439 | -0.818 | -- | 2.93 | 0.611 | 4.04 | 25.63 | 4469 | -- | -- |
| 37.34 | 0.285 | 10 | 0.73 | 0.426 | -1.07 | -- | -- | 0.631 | 4.05 | 19 | 22376 | -- | -- |
| 44.96 | 0.314 | 10.1 | -0.101 | -- | -0.401 | -- | 0.316 | 0.456 | -- | 25.63 | 4469 | -- | -- |
| 51.78 | 0.337 | 10.1 | -0.268 | 0.418 | -- | 0.0457 | -- | 0.288 | 4.29 | -- | -- | -- | -- |
| 51.79 | 0.337 | 10.1 | -0.268 | 0.418 | -- | -- | -- | 0.288 | 4.29 | -- | -- | -- | -- |
| 45.39 | 0.315 | 10.1 | -0.177 | -- | -0.393 | -- | -- | 0.434 | -- | 25.63 | 4469 | -- | -- |
| 41.02 | 0.298 | 10.1 | -- | 0.417 | -0.666 | -- | -- | 0.497 | 4.39 | 19.72 | 9672 | -- | -- |
| 61.22 | 0.366 | 10.1 | -0.252 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 53.69 | 0.343 | 10.1 | -- | 0.413 | -- | -- | -- | 0.317 | 4.31 | -- | -- | -- | -- |
| 46.21 | 0.318 | 10.1 | -- | -- | -0.401 | -- | -- | 0.456 | -- | 25.63 | 4469 | -- | -- |
| 62.9 | 0.37 | 10.1 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 2 | 34.48 | temperature | 20.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 34.85 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 15 | 35.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 24 | 36.27 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 35 | 36.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 41 | 36.85 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 50 | 36.96 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 51 | 36.97 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 52 | 36.97 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 53 | 36.97 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 54 | 36.98 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 57 | 36.99 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 58 | 36.99 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 67 | 37.01 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 72 | 37.02 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 77 | 37.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 90 | 37.04 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 97 | 37.05 | temperature | 20.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 99 | 37.05 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 104 | 37.05 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 118 | 37.06 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 127 | 37.07 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 137 | 37.08 | temperature | 20.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 156 | 37.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 227 | 37.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 243 | 37.15 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 258 | 37.16 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 259 | 37.16 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 276 | 37.17 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 280 | 37.18 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 295 | 37.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 299 | 37.19 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 327 | 37.21 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 376 | 37.25 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 401 | 37.27 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 22 |
| 416 | 37.28 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 430 | 37.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 20 |
| 439 | 37.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 455 | 37.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 471 | 37.31 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 476 | 37.32 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 511 | 37.34 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 512 | 37.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 524 | 37.34 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 527 | 37.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 555 | 37.36 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 574 | 37.36 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 15 | 22 |
| 576 | 37.36 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 591 | 37.37 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 16 |
| 604 | 37.37 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 606 | 37.38 | temperature | 25.0 | 4320 | > th | dose independent | no | NA | NA |
| 607 | 37.38 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 632 | 37.39 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 667 | 37.40 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 24 | 22 |
| 696 | 37.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 21 |
| 714 | 37.42 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 19 |
| 728 | 37.43 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 755 | 37.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 780 | 37.45 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 800 | 37.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 807 | 37.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 877 | 37.47 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 879 | 37.47 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 881 | 37.47 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 934 | 37.49 | temperature | 25.0 | 4320 | < th | dose independent | no | NA | NA |
| 936 | 37.49 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 967 | 37.49 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 984 | 37.50 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 996 | 37.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |