BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0470400 Os02g0470400|Os02g0470400
(2989 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0470400 Cytochrome cd1-nitrite reductase-like, C-termi... 5974 0.0
Os10g0565300 Conserved hypothetical protein 343 9e-94
>Os02g0470400 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain
containing protein
Length = 2989
Score = 5974 bits (15499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2894/2989 (96%), Positives = 2894/2989 (96%)
Query: 1 MYASTLNKSALVHRNHTREQRRQTVNVVQSSRGLSVKTKLHSLKIKDELQGRLSMSSNYL 60
MYASTLNKSALVHRNHTREQRRQTVNVVQSSRGLSVKTKLHSLKIKDELQGRLSMSSNYL
Sbjct: 1 MYASTLNKSALVHRNHTREQRRQTVNVVQSSRGLSVKTKLHSLKIKDELQGRLSMSSNYL 60
Query: 61 ACSVINDNLETVDSSSPDEEDHRKSFSVEEDSFMDALTDFTPDQSPNLQDLEIPSNSIFD 120
ACSVINDNLETVDSSSPDEEDHRKSFSVEEDSFMDALTDFTPDQSPNLQDLEIPSNSIFD
Sbjct: 61 ACSVINDNLETVDSSSPDEEDHRKSFSVEEDSFMDALTDFTPDQSPNLQDLEIPSNSIFD 120
Query: 121 PDGHTQLSSKDGLSFDGDQQKVKPTEVFYEAQDNNINDFVVLTFLTRTPDSCLYDGIDSQ 180
PDGHTQLSSKDGLSFDGDQQKVKPTEVFYEAQDNNINDFVVLTFLTRTPDSCLYDGIDSQ
Sbjct: 121 PDGHTQLSSKDGLSFDGDQQKVKPTEVFYEAQDNNINDFVVLTFLTRTPDSCLYDGIDSQ 180
Query: 181 MCIRMSALEFYCNRPTLVALIEFGFDLSMVNSAPKGDSDTTPAVRNVKPTGMEDNARNFV 240
MCIRMSALEFYCNRPTLVALIEFGFDLSMVNSAPKGDSDTTPAVRNVKPTGMEDNARNFV
Sbjct: 181 MCIRMSALEFYCNRPTLVALIEFGFDLSMVNSAPKGDSDTTPAVRNVKPTGMEDNARNFV 240
Query: 241 KGLLGYGKRRTIFNMKMDVDRVSMFLNKEDGSQLAMFVQEKFLFDLKVHPGSFSIDGMLG 300
KGLLGYGKRRTIFNMKMDVDRVSMFLNKEDGSQLAMFVQEKFLFDLKVHPGSFSIDGMLG
Sbjct: 241 KGLLGYGKRRTIFNMKMDVDRVSMFLNKEDGSQLAMFVQEKFLFDLKVHPGSFSIDGMLG 300
Query: 301 NMRFCDMSLGPEHRWGWLCDIRKPGVESLIKFAFQSYSVDDDDYEGYNYSLIGQLSAVRI 360
NMRFCDMSLGPEHRWGWLCDIRKPGVESLIKFAFQSYSVDDDDYEGYNYSLIGQLSAVRI
Sbjct: 301 NMRFCDMSLGPEHRWGWLCDIRKPGVESLIKFAFQSYSVDDDDYEGYNYSLIGQLSAVRI 360
Query: 361 VFLYRFVQEFTSYFMELATPHTEEAIKFIDKVGGFEWLIQKYEIDGASAIKLDLSLDTPI 420
VFLYRFVQEFTSYFMELATPHTEEAIKFIDKVGGFEWLIQKYEIDGASAIKLDLSLDTPI
Sbjct: 361 VFLYRFVQEFTSYFMELATPHTEEAIKFIDKVGGFEWLIQKYEIDGASAIKLDLSLDTPI 420
Query: 421 IIVPKNSQSKDYIQLDLGQLKVRNGFCWRGGEESDPSAVRLDILQAEINGINMAVGVNGI 480
IIVPKNSQSKDYIQLDLGQLKVRNGFCWRGGEESDPSAVRLDILQAEINGINMAVGVNGI
Sbjct: 421 IIVPKNSQSKDYIQLDLGQLKVRNGFCWRGGEESDPSAVRLDILQAEINGINMAVGVNGI 480
Query: 481 LGKSMIREGHGINIEVRRSLRDVFKRVPMLCMKFQIGLLHGIMSDKEYNVITSCISTNLS 540
LGKSMIREGHGINIEVRRSLRDVFKRVPMLCMKFQIGLLHGIMSDKEYNVITSCISTNLS
Sbjct: 481 LGKSMIREGHGINIEVRRSLRDVFKRVPMLCMKFQIGLLHGIMSDKEYNVITSCISTNLS 540
Query: 541 EAPNLPPGFRDNVNRTKDSIRLLADKVNLNNHLLLSRTVVVMTVDVQYALFELRNGPDAE 600
EAPNLPPGFRDNVNRTKDSIRLLADKVNLNNHLLLSRTVVVMTVDVQYALFELRNGPDAE
Sbjct: 541 EAPNLPPGFRDNVNRTKDSIRLLADKVNLNNHLLLSRTVVVMTVDVQYALFELRNGPDAE 600
Query: 601 SPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRPDTKSEMRLMLGSYSETSKLST 660
SPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRPDTKSEMRLMLGSYSETSKLST
Sbjct: 601 SPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRPDTKSEMRLMLGSYSETSKLST 660
Query: 661 QDPSSDVGVSNLTMVILDYRWRSSFQSFVIRIQEXXXXXXXXXXXXXXXXXXXXXGTITG 720
QDPSSDVGVSNLTMVILDYRWRSSFQSFVIRIQE GTITG
Sbjct: 661 QDPSSDVGVSNLTMVILDYRWRSSFQSFVIRIQEPRVLVVLDFLLPVVEFFVPNLGTITG 720
Query: 721 REESLDPKNDPLIKSDDIILCEPVFFQRENFIQLSPGRQLIVDGCDIDDFTYDGCGGTIS 780
REESLDPKNDPLIKSDDIILCEPVFFQRENFIQLSPGRQLIVDGCDIDDFTYDGCGGTIS
Sbjct: 721 REESLDPKNDPLIKSDDIILCEPVFFQRENFIQLSPGRQLIVDGCDIDDFTYDGCGGTIS 780
Query: 781 LCDEYDKKGQLYSGTIIILGRGKKLRFKNVKIENGALLRRCVYLNAGSSYSISAEDGVEV 840
LCDEYDKKGQLYSGTIIILGRGKKLRFKNVKIENGALLRRCVYLNAGSSYSISAEDGVEV
Sbjct: 781 LCDEYDKKGQLYSGTIIILGRGKKLRFKNVKIENGALLRRCVYLNAGSSYSISAEDGVEV 840
Query: 841 SVLESSLXXXXXXXXXXXXYKRINALQPGADTPSAQMLNFTFEAQVVSPEFTFYDSSKLS 900
SVLESSL YKRINALQPGADTPSAQMLNFTFEAQVVSPEFTFYDSSKLS
Sbjct: 841 SVLESSLNDNEDDNTQNEEYKRINALQPGADTPSAQMLNFTFEAQVVSPEFTFYDSSKLS 900
Query: 901 IDDSLHIEKLLRAKMDFSFMYASKEKDIWARSVVKDLTIEAGSGLLVLEPVDVSWKYTSV 960
IDDSLHIEKLLRAKMDFSFMYASKEKDIWARSVVKDLTIEAGSGLLVLEPVDVSWKYTSV
Sbjct: 901 IDDSLHIEKLLRAKMDFSFMYASKEKDIWARSVVKDLTIEAGSGLLVLEPVDVSWKYTSV 960
Query: 961 SEKTNIVLASTDFGNNNPLVSCINFKRVWTSPNGELPGYNLTFWRPQAPSNYVILGDCVS 1020
SEKTNIVLASTDFGNNNPLVSCINFKRVWTSPNGELPGYNLTFWRPQAPSNYVILGDCVS
Sbjct: 961 SEKTNIVLASTDFGNNNPLVSCINFKRVWTSPNGELPGYNLTFWRPQAPSNYVILGDCVS 1020
Query: 1021 SRCVPPSQVVVAVSNTYGRVRKPLGFRLVHVLPVSLEQMNSSQAAEDNECSIWIPVPPPG 1080
SRCVPPSQVVVAVSNTYGRVRKPLGFRLVHVLPVSLEQMNSSQAAEDNECSIWIPVPPPG
Sbjct: 1021 SRCVPPSQVVVAVSNTYGRVRKPLGFRLVHVLPVSLEQMNSSQAAEDNECSIWIPVPPPG 1080
Query: 1081 YIALGVTPGFSIWRVDNVIASFHAHNSIEQPTRVEALDLHHVLLRNPNCYIVKDLNADSS 1140
YIALGVTPGFSIWRVDNVIASFHAHNSIEQPTRVEALDLHHVLLRNPNCYIVKDLNADSS
Sbjct: 1081 YIALGVTPGFSIWRVDNVIASFHAHNSIEQPTRVEALDLHHVLLRNPNCYIVKDLNADSS 1140
Query: 1141 VRSNQPADQLTHRKSTSGWDAVRNLSRPSSYCMSTPHFERIWWDKGGDTKRPFSIWRPIP 1200
VRSNQPADQLTHRKSTSGWDAVRNLSRPSSYCMSTPHFERIWWDKGGDTKRPFSIWRPIP
Sbjct: 1141 VRSNQPADQLTHRKSTSGWDAVRNLSRPSSYCMSTPHFERIWWDKGGDTKRPFSIWRPIP 1200
Query: 1201 RFGFSSVGDCITEGFEPPTLGILFKCDSAIVSERPTQFKKVAQIDRKGSDEILFFWYPVP 1260
RFGFSSVGDCITEGFEPPTLGILFKCDSAIVSERPTQFKKVAQIDRKGSDEILFFWYPVP
Sbjct: 1201 RFGFSSVGDCITEGFEPPTLGILFKCDSAIVSERPTQFKKVAQIDRKGSDEILFFWYPVP 1260
Query: 1261 PPGYASLGCVATKTDEMPSNDSVCCPKMGLVNHANILEDPISRSSSSKGPNCWSIWKVSN 1320
PPGYASLGCVATKTDEMPSNDSVCCPKMGLVNHANILEDPISRSSSSKGPNCWSIWKVSN
Sbjct: 1261 PPGYASLGCVATKTDEMPSNDSVCCPKMGLVNHANILEDPISRSSSSKGPNCWSIWKVSN 1320
Query: 1321 QGCTFLATSDTKKPPAQMAYRIADHAKPKVRENITAELKFGCLSVSILDSSCGMVTPIFD 1380
QGCTFLATSDTKKPPAQMAYRIADHAKPKVRENITAELKFGCLSVSILDSSCGMVTPIFD
Sbjct: 1321 QGCTFLATSDTKKPPAQMAYRIADHAKPKVRENITAELKFGCLSVSILDSSCGMVTPIFD 1380
Query: 1381 TTIANINLATHGKFETMNAVLICSISASTFNRHLEAWEPFVEPFDGIFKFETYDTSKHPP 1440
TTIANINLATHGKFETMNAVLICSISASTFNRHLEAWEPFVEPFDGIFKFETYDTSKHPP
Sbjct: 1381 TTIANINLATHGKFETMNAVLICSISASTFNRHLEAWEPFVEPFDGIFKFETYDTSKHPP 1440
Query: 1441 SKVGKRIRVAATSPLNDTVDSVKNADDLSCSALDEDDFQRIVFENKLGCDIYVKKLEDNE 1500
SKVGKRIRVAATSPLNDTVDSVKNADDLSCSALDEDDFQRIVFENKLGCDIYVKKLEDNE
Sbjct: 1441 SKVGKRIRVAATSPLNDTVDSVKNADDLSCSALDEDDFQRIVFENKLGCDIYVKKLEDNE 1500
Query: 1501 DIIELLQHENQVSLFMPPPRFSDKLSVLSNSTESRYYVIIQIFESKGLPIMDDGNDHSYF 1560
DIIELLQHENQVSLFMPPPRFSDKLSVLSNSTESRYYVIIQIFESKGLPIMDDGNDHSYF
Sbjct: 1501 DIIELLQHENQVSLFMPPPRFSDKLSVLSNSTESRYYVIIQIFESKGLPIMDDGNDHSYF 1560
Query: 1561 CALRLLVGSDVSDQYKIFPQSARTRCVKPLKTCESQTHHAKWNEHFIFEVPEQASAHLEI 1620
CALRLLVGSDVSDQYKIFPQSARTRCVKPLKTCESQTHHAKWNEHFIFEVPEQASAHLEI
Sbjct: 1561 CALRLLVGSDVSDQYKIFPQSARTRCVKPLKTCESQTHHAKWNEHFIFEVPEQASAHLEI 1620
Query: 1621 EVTNLASKAGKGEVLGSLSIPIGRGATILKRAASMRIIQQAADVKRVLTCPLTRKGQALN 1680
EVTNLASKAGKGEVLGSLSIPIGRGATILKRAASMRIIQQAADVKRVLTCPLTRKGQALN
Sbjct: 1621 EVTNLASKAGKGEVLGSLSIPIGRGATILKRAASMRIIQQAADVKRVLTCPLTRKGQALN 1680
Query: 1681 HENVKHCGMLVLSSCYVERSTQTNFQSWKDSLSNAKSGFWIGLGPDGPWECFTAALPLST 1740
HENVKHCGMLVLSSCYVERSTQTNFQSWKDSLSNAKSGFWIGLGPDGPWECFTAALPLST
Sbjct: 1681 HENVKHCGMLVLSSCYVERSTQTNFQSWKDSLSNAKSGFWIGLGPDGPWECFTAALPLST 1740
Query: 1741 IPKSLNNSHFALEVTMRNGKKHASLRALAIIANGFDIKLEVSVCPVTMHXXXXXXXXXXX 1800
IPKSLNNSHFALEVTMRNGKKHASLRALAIIANGFDIKLEVSVCPVTMH
Sbjct: 1741 IPKSLNNSHFALEVTMRNGKKHASLRALAIIANGFDIKLEVSVCPVTMHSSSVSNAGSTS 1800
Query: 1801 XXXIIDEVFENQWYRPTSGWGSNPASDQGCDVGPWSTKDGSYSSKAFFEPRLPPGWKWTS 1860
IIDEVFENQWYRPTSGWGSNPASDQGCDVGPWSTKDGSYSSKAFFEPRLPPGWKWTS
Sbjct: 1801 STSIIDEVFENQWYRPTSGWGSNPASDQGCDVGPWSTKDGSYSSKAFFEPRLPPGWKWTS 1860
Query: 1861 PWKIEISSSVDSDGWAYAANFQNLNXXXXXXXXXXXHDFXXXXXXXXXXQSMQEQSAEIP 1920
PWKIEISSSVDSDGWAYAANFQNLN HDF QSMQEQSAEIP
Sbjct: 1861 PWKIEISSSVDSDGWAYAANFQNLNWPSSWKSSKSPHDFVRRRRWVRSRQSMQEQSAEIP 1920
Query: 1921 RKIIAVMEPHASTALPWTAMIKDMDLCLQVRPFSEKSQESYSWSQVLSLGSESIPXXXXX 1980
RKIIAVMEPHASTALPWTAMIKDMDLCLQVRPFSEKSQESYSWSQVLSLGSESIP
Sbjct: 1921 RKIIAVMEPHASTALPWTAMIKDMDLCLQVRPFSEKSQESYSWSQVLSLGSESIPKQQQS 1980
Query: 1981 XXXXXXXXXXXXVPSKNSVLRLADLEKKDMLSYCCPPVGIKQNFWLSVGIDASILHTDLN 2040
VPSKNSVLRLADLEKKDMLSYCCPPVGIKQNFWLSVGIDASILHTDLN
Sbjct: 1981 SLSRQSTLKQSSVPSKNSVLRLADLEKKDMLSYCCPPVGIKQNFWLSVGIDASILHTDLN 2040
Query: 2041 MPIYDWKICFNSILRLENKLPYEAEYAIWEKSTEGSMVERQHGIVSSGGSAFIYSADIRK 2100
MPIYDWKICFNSILRLENKLPYEAEYAIWEKSTEGSMVERQHGIVSSGGSAFIYSADIRK
Sbjct: 2041 MPIYDWKICFNSILRLENKLPYEAEYAIWEKSTEGSMVERQHGIVSSGGSAFIYSADIRK 2100
Query: 2101 PIYLTMFVQNGWIIEKDYMNRSAGVRFESRDNNSSPARVAICVAVGSCKQYSIGVSLFDL 2160
PIYLTMFVQNGWIIEKDYMNRSAGVRFESRDNNSSPARVAICVAVGSCKQYSIGVSLFDL
Sbjct: 2101 PIYLTMFVQNGWIIEKDYMNRSAGVRFESRDNNSSPARVAICVAVGSCKQYSIGVSLFDL 2160
Query: 2161 ENKEHVDVKAFTSDGSYYWFSAQLKMTSDRTKLRLEGYKWSTPFSIDANGVMCVLMNNTT 2220
ENKEHVDVKAFTSDGSYYWFSAQLKMTSDRTKLRLEGYKWSTPFSIDANGVMCVLMNNTT
Sbjct: 2161 ENKEHVDVKAFTSDGSYYWFSAQLKMTSDRTKLRLEGYKWSTPFSIDANGVMCVLMNNTT 2220
Query: 2221 GNDQALVRVNVRSGTKCSRYEVVFQLACWSSPYRVENRSMFLPVRFRQVGGDDYSWRSLP 2280
GNDQALVRVNVRSGTKCSRYEVVFQLACWSSPYRVENRSMFLPVRFRQVGGDDYSWRSLP
Sbjct: 2221 GNDQALVRVNVRSGTKCSRYEVVFQLACWSSPYRVENRSMFLPVRFRQVGGDDYSWRSLP 2280
Query: 2281 PNSSASFFWEDIGRRRLLEVLVDGSDPTTSMTYDIDVVMDHQPLAASSRVKKALRVTVLK 2340
PNSSASFFWEDIGRRRLLEVLVDGSDPTTSMTYDIDVVMDHQPLAASSRVKKALRVTVLK
Sbjct: 2281 PNSSASFFWEDIGRRRLLEVLVDGSDPTTSMTYDIDVVMDHQPLAASSRVKKALRVTVLK 2340
Query: 2341 EGKFHVTQINDWLPDNRTREQTTERLLSPIFQPSEVDSGQSSPDLDSEFHVTLELTEFGL 2400
EGKFHVTQINDWLPDNRTREQTTERLLSPIFQPSEVDSGQSSPDLDSEFHVTLELTEFGL
Sbjct: 2341 EGKFHVTQINDWLPDNRTREQTTERLLSPIFQPSEVDSGQSSPDLDSEFHVTLELTEFGL 2400
Query: 2401 SIIDHMPEEILFLSVQQLLLAYSSGMGSGINRLKMQMHWIQVDNQLPFVLMPVLFCPQRM 2460
SIIDHMPEEILFLSVQQLLLAYSSGMGSGINRLKMQMHWIQVDNQLPFVLMPVLFCPQRM
Sbjct: 2401 SIIDHMPEEILFLSVQQLLLAYSSGMGSGINRLKMQMHWIQVDNQLPFVLMPVLFCPQRM 2460
Query: 2461 ENQSDYIIKFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNIHEPIIWRLHEMIQNLKFD 2520
ENQSDYIIKFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNIHEPIIWRLHEMIQNLKFD
Sbjct: 2461 ENQSDYIIKFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNIHEPIIWRLHEMIQNLKFD 2520
Query: 2521 RIXXXXXXXXXXDPILKIGLLNISEIRFRVSMAMSPTQRPRGVLGFWSSLMTALGNMEHM 2580
RI DPILKIGLLNISEIRFRVSMAMSPTQRPRGVLGFWSSLMTALGNMEHM
Sbjct: 2521 RISSSESSAVSVDPILKIGLLNISEIRFRVSMAMSPTQRPRGVLGFWSSLMTALGNMEHM 2580
Query: 2581 PVRIAQRYREELCMRQSALMSSAMSNIQKDILSQPLQLLSGVDILGNASSALSNMSKGIA 2640
PVRIAQRYREELCMRQSALMSSAMSNIQKDILSQPLQLLSGVDILGNASSALSNMSKGIA
Sbjct: 2581 PVRIAQRYREELCMRQSALMSSAMSNIQKDILSQPLQLLSGVDILGNASSALSNMSKGIA 2640
Query: 2641 ALSMDKKFIQGRMRQDSKGVEDFGDVIRDGGGALAKGIFRGVTGILTKPIEGAKSSGVEG 2700
ALSMDKKFIQGRMRQDSKGVEDFGDVIRDGGGALAKGIFRGVTGILTKPIEGAKSSGVEG
Sbjct: 2641 ALSMDKKFIQGRMRQDSKGVEDFGDVIRDGGGALAKGIFRGVTGILTKPIEGAKSSGVEG 2700
Query: 2701 FVQGVGKGLIGAAAQPVSGVLDLLSKTTEGANAVKMKISSAIMAEEQLARRRLPRAIGGD 2760
FVQGVGKGLIGAAAQPVSGVLDLLSKTTEGANAVKMKISSAIMAEEQLARRRLPRAIGGD
Sbjct: 2701 FVQGVGKGLIGAAAQPVSGVLDLLSKTTEGANAVKMKISSAIMAEEQLARRRLPRAIGGD 2760
Query: 2761 SLLYPYDDHKAAGQAILQLAEYATFLGQVDLFKVRGKFASTDAYEDHFMLPKGKILLITH 2820
SLLYPYDDHKAAGQAILQLAEYATFLGQVDLFKVRGKFASTDAYEDHFMLPKGKILLITH
Sbjct: 2761 SLLYPYDDHKAAGQAILQLAEYATFLGQVDLFKVRGKFASTDAYEDHFMLPKGKILLITH 2820
Query: 2821 RRVLLLQVPMMTQRKFSPAKDPCSVIWDVLWDDLVTVEMTHGKKDAPGSLPSKLILYLKA 2880
RRVLLLQVPMMTQRKFSPAKDPCSVIWDVLWDDLVTVEMTHGKKDAPGSLPSKLILYLKA
Sbjct: 2821 RRVLLLQVPMMTQRKFSPAKDPCSVIWDVLWDDLVTVEMTHGKKDAPGSLPSKLILYLKA 2880
Query: 2881 KPTNSREVVRLVKCNRGSDQATLIYSSIDGAYKAYGPKSTKELLRWKVPRPYAPRNTSGR 2940
KPTNSREVVRLVKCNRGSDQATLIYSSIDGAYKAYGPKSTKELLRWKVPRPYAPRNTSGR
Sbjct: 2881 KPTNSREVVRLVKCNRGSDQATLIYSSIDGAYKAYGPKSTKELLRWKVPRPYAPRNTSGR 2940
Query: 2941 TVQDLSYGNKPCKLQLVEDWKSSVRECPLAVAYTQRVVGRAGAQHLILI 2989
TVQDLSYGNKPCKLQLVEDWKSSVRECPLAVAYTQRVVGRAGAQHLILI
Sbjct: 2941 TVQDLSYGNKPCKLQLVEDWKSSVRECPLAVAYTQRVVGRAGAQHLILI 2989
>Os10g0565300 Conserved hypothetical protein
Length = 776
Score = 343 bits (881), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 195/546 (35%), Positives = 316/546 (57%), Gaps = 18/546 (3%)
Query: 2389 FHVTLELTEFGLSIIDHMPEEILFLSVQQLLLAYSSGMGSGI-NRLKMQMHWIQVDNQLP 2447
+ +EL G+S+IDH P E+L+L +Q+L ++Y +G SG +R K+ + +Q+DNQLP
Sbjct: 12 LELIVELGVVGVSLIDHKPRELLYLHLQKLFISYMTGYNSGTTSRFKLIIGHMQLDNQLP 71
Query: 2448 FVLMPVLFCPQRMENQSDYIIKFSMTLQTNNSLEFCVYPYLGVQVPENCVFFVNIHEPII 2507
+MPV + M + + + K ++ + S VYP++ ++V + + +NIHEPII
Sbjct: 72 LSIMPVALATESMPDSNHPVFKANIAVSNVTSNGIQVYPHVYIRVTDQ-TWRLNIHEPII 130
Query: 2508 WRLHEMIQNLKFDRIXXXXXXXXXXDPILKIGLLNISEIRFRVSMAMSPTQRPRGVLGFW 2567
W L + NL+F DP ++I L++ISEIR ++S+ +PTQRPRGVLG W
Sbjct: 131 WALVDFYSNLRFVS-TNNISTVTEVDPEIRIELVDISEIRLKISLETAPTQRPRGVLGIW 189
Query: 2568 SSLMTALGNMEHMPVRIAQRYREELCMRQSALMSSAMSNIQKDILSQPLQLLSGVDILGN 2627
S +++A+GN + V + + MR+S+++ + + I++D++ PL L+ VD LG
Sbjct: 190 SPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHLIFSVDFLGV 249
Query: 2628 ASSALSNMSKGIAALSMDKKFIQGRMRQD-SKGVEDFGDVIRDGGGALAKGIFRGVTGIL 2686
S LS++SKG A LS D +F+Q R +Q S+ + GD + G A A+G+ GV+G+L
Sbjct: 250 TKSTLSSLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQGLAFGVSGVL 309
Query: 2687 TKPIEGAKSSGVEGFVQGVGKGLIGAAAQPVSGVLDLLSKTTEGANAVKMKISSAIMAEE 2746
KP+E A+ G G G+G+ +G QP+SG D S T +G +A M+ + +
Sbjct: 310 RKPVESARQYGAIGIAHGLGRAFVGFIVQPLSGAFDFFSLTVDGISASFMRCVDILNNKH 369
Query: 2747 QLARRRLPRAIGGDSLLYPYDDHKAAGQAILQLAEYATFLGQVDLFKVRGKFASTDAYED 2806
R R PRAI D ++ YD +AAGQ L LAE + + DLF+ K+A +D YED
Sbjct: 370 VPQRIRDPRAIHRDGIIREYDKVQAAGQMALYLAEASRYFACTDLFREPSKYAWSDYYED 429
Query: 2807 HFMLPKGKILLITHRRVLLLQVPMMTQRKFSPAKDPCSVIWDVLWDDLVTVEMTHGKKDA 2866
HF++ K+ L+T++RV+LLQ + + K P ++WDV W+D++ +E+ A
Sbjct: 430 HFIVQNQKVALVTNKRVILLQCVDLDKMD----KKPSKILWDVPWEDVLALELA----KA 481
Query: 2867 PGSLPSKLILYLKAKPTNSREVVRLVKCNRGSD---QATLIYSSIDGAYKAYGPKSTKEL 2923
PS +I++LK S VRL+KCN + QA L+ SSI ++++ ++ ++
Sbjct: 482 GYQRPSHVIIHLK-NFRRSENFVRLIKCNVDEEHEPQALLLCSSIRKMWRSH--QADMKV 538
Query: 2924 LRWKVP 2929
+ KVP
Sbjct: 539 VPLKVP 544
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 100,428,303
Number of extensions: 4257441
Number of successful extensions: 8621
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 8599
Number of HSP's successfully gapped: 2
Length of query: 2989
Length of database: 17,035,801
Length adjustment: 119
Effective length of query: 2870
Effective length of database: 10,822,335
Effective search space: 31060101450
Effective search space used: 31060101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 165 (68.2 bits)