BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0560200 Os10g0560200|AK069913
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0560200 Protein of unknown function Cys-rich family pr... 488 e-138
Os03g0101800 Protein of unknown function Cys-rich family pr... 355 1e-98
>Os10g0560200 Protein of unknown function Cys-rich family protein
Length = 235
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MAAAAEEAGLGHPSRYVQLTRDQDAPADEDIRPGELNLPAHFPQLEQRRCCECGQQLPES 60
MAAAAEEAGLGHPSRYVQLTRDQDAPADEDIRPGELNLPAHFPQLEQRRCCECGQQLPES
Sbjct: 1 MAAAAEEAGLGHPSRYVQLTRDQDAPADEDIRPGELNLPAHFPQLEQRRCCECGQQLPES 60
Query: 61 YEAPADEPWTTGICGCAEDTESCWTGSFFPCVLFGHNVEALREDIPWTTPCTCHAVCVEG 120
YEAPADEPWTTGICGCAEDTESCWTGSFFPCVLFGHNVEALREDIPWTTPCTCHAVCVEG
Sbjct: 61 YEAPADEPWTTGICGCAEDTESCWTGSFFPCVLFGHNVEALREDIPWTTPCTCHAVCVEG 120
Query: 121 GIALAILTVIFPGIDPSTSILIGEGLVFSWWLFATYTGIFRQQLQRKYHLKDSPCDPCLV 180
GIALAILTVIFPGIDPSTSILIGEGLVFSWWLFATYTGIFRQQLQRKYHLKDSPCDPCLV
Sbjct: 121 GIALAILTVIFPGIDPSTSILIGEGLVFSWWLFATYTGIFRQQLQRKYHLKDSPCDPCLV 180
Query: 181 HCCLHWCANCQEHRERKGRLADNNANRNTIVNPPPMQEMSVVGNHPSITPENGAA 235
HCCLHWCANCQEHRERKGRLADNNANRNTIVNPPPMQEMSVVGNHPSITPENGAA
Sbjct: 181 HCCLHWCANCQEHRERKGRLADNNANRNTIVNPPPMQEMSVVGNHPSITPENGAA 235
>Os03g0101800 Protein of unknown function Cys-rich family protein
Length = 240
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/233 (74%), Positives = 193/233 (82%), Gaps = 3/233 (1%)
Query: 5 AEEAGLGHPSRYVQLTRDQDAPA-DEDIRPGELNLPAHFPQLEQRRCCECGQQLPESYEA 63
AEEA L HPSRYV+L+R+ DAPA EDIRPGELN P H PQLE RRC ECGQ LPESYE
Sbjct: 2 AEEATLSHPSRYVKLSREHDAPAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYEP 61
Query: 64 PADEPWTTGICGCAEDTESCWTGSFFPCVLFGHNVEALREDIPWTTPCTCHAVCVEGGIA 123
PADEPWTTGI C +D ++C TG F PCVLFG N+EALREDIPWTTPC CHAV VEGGIA
Sbjct: 62 PADEPWTTGIFACTDDPQTCRTGLFCPCVLFGRNIEALREDIPWTTPCVCHAVFVEGGIA 121
Query: 124 LAILTVIFPGIDPSTSILIGEGLVFSWWLFATYTGIFRQQLQRKYHLKDSPCDPCLVHCC 183
LAILT IF G+DP TS LIGEGLVFSWWL TYTGIFRQ+LQRKYHLK+SPCDPC+VHCC
Sbjct: 122 LAILTAIFHGVDPRTSFLIGEGLVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHCC 181
Query: 184 LHWCANCQEHRERKGRLADNNANRNTIVNPPPMQEMSVVGNHPSITP--ENGA 234
LHWCANCQEHRER GRLA+N+A T+VNPP +QEMS+ + ++P ENGA
Sbjct: 182 LHWCANCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGA 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,744,182
Number of extensions: 447654
Number of successful extensions: 878
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)