BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0545700 Os10g0545700|AK074009
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0545700  Similar to Dual specificity phosphatase Cdc25 ...   297   2e-81
Os03g0108000  Similar to Dual specificity phosphatase Cdc25 ...   203   4e-53

>Os10g0545700 Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath
          Length = 160

 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/160 (90%), Positives = 145/160 (90%)

Query: 1   MCRFLISTPFSXXXXXXXXXXXXXXXSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQA 60
           MCRFLISTPFS               SVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQA
Sbjct: 1   MCRFLISTPFSRRRGERKAEAGRMARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQA 60

Query: 61  HIGGSHHFSSRSFAARLPELARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESG 120
           HIGGSHHFSSRSFAARLPELARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESG
Sbjct: 61  HIGGSHHFSSRSFAARLPELARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESG 120

Query: 121 TKNIMVLERGFNGWELSGQPVCRCTDAPCKGTCSPEEPEL 160
           TKNIMVLERGFNGWELSGQPVCRCTDAPCKGTCSPEEPEL
Sbjct: 121 TKNIMVLERGFNGWELSGQPVCRCTDAPCKGTCSPEEPEL 160



>Os03g0108000 Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath
          Length = 146

 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 28  VSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARATGDK 87
           VSYVSAA+L+ M R +PR+A++DVRDEER Y AHI GSHH++S SF  RLPELA+AT  K
Sbjct: 21  VSYVSAAQLVPMLR-DPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQATKGK 79

Query: 88  DTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCRCTDA 147
           +T+VFHCALSKVRGPSCA+M+ DYLSE  E+S  KNIMVLERGFNGWELSG+PVCRC DA
Sbjct: 80  ETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRCKDA 139

Query: 148 PCKGTCS 154
           PCKG CS
Sbjct: 140 PCKGVCS 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,942,186
Number of extensions: 172999
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)