BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0520600 Os10g0520600|AK061230
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0520600 UAS domain containing protein 425 e-119
Os09g0482000 UAS domain containing protein 89 7e-18
>Os10g0520600 UAS domain containing protein
Length = 369
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/357 (64%), Positives = 230/357 (64%)
Query: 13 HLGRAPRLTPPLLASSFVLXXXXXXXXXXXKSPNPSSXXXXXXXXXXXXXXXXXXXXXXX 72
HLGRAPRLTPPLLASSFVL KSPNPSS
Sbjct: 13 HLGRAPRLTPPLLASSFVLTTTAAAAAADAKSPNPSSALGLAAARRHGGDRRRQGQLLPG 72
Query: 73 XXXXXXXXXXXXXXXXXXXGPPARRLLHHPDTPAFCGGCLCAEPVAAFIDENFVAWGGSI 132
GPPARRLLHHPDTPAFCGGCLCAEPVAAFIDENFVAWGGSI
Sbjct: 73 GHRHLRPRPLHRDPRRPQLGPPARRLLHHPDTPAFCGGCLCAEPVAAFIDENFVAWGGSI 132
Query: 133 RRTEGFKMSNSLNASRFPFCAVVMASTNQRIVLLRQIEGPKSPEEMITTLQGAVEECSAS 192
RRTEGFKMSNSLNASRFPFCAVVMASTNQRIVLLRQIEGPKSPEEMITTLQGAVEECSAS
Sbjct: 133 RRTEGFKMSNSLNASRFPFCAVVMASTNQRIVLLRQIEGPKSPEEMITTLQGAVEECSAS 192
Query: 193 LVAARIDAXXXXXXXXXXXXXDAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 252
LVAARIDA DAAY
Sbjct: 193 LVAARIDAEERLNNQRLREEQDAAYRAALEADQARERQRREEQEKREREAAEAERKRKEE 252
Query: 253 XXXXXXXXXXXXXXXXXXXXXXXXXXMALGAEPEKGPDVTRVLIRFPTGERKERRFNSST 312
MALGAEPEKGPDVTRVLIRFPTGERKERRFNSST
Sbjct: 253 EEAQERAAQEAAEKEAALARRRQEKAMALGAEPEKGPDVTRVLIRFPTGERKERRFNSST 312
Query: 313 TITSLYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKLSQTLEEAGLHPQASLFIEIEQ 369
TITSLYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKLSQTLEEAGLHPQASLFIEIEQ
Sbjct: 313 TITSLYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKLSQTLEEAGLHPQASLFIEIEQ 369
>Os09g0482000 UAS domain containing protein
Length = 396
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 101 HPDTPAFCGGCLCAEPVAAFIDENFVAWGGSIRRTEGFKMSNSLNASRFPFCAVVMASTN 160
+P FC G +C++ V F+D NFV+WG R EG M +L FPFCAVV ++
Sbjct: 120 NPYADQFCTGTMCSDVVVEFLDANFVSWGAVAGRGEGAAMVAALRPGSFPFCAVVSPVSD 179
Query: 161 QRIVLLRQIEGPKSPEEMITTLQGAVEECSAS 192
+ IV+L+Q+EGP SP E++ LQ ++E AS
Sbjct: 180 ESIVILQQVEGPVSPSELVDILQRTIDEQRAS 211
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%)
Query: 292 TRVLIRFPTGERKERRFNSSTTITSLYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKLSQT 351
T+++IRFP GER+++ F+ + TI +Y YVDSL Y LV ++PR TYG ++L +
Sbjct: 319 TKIMIRFPNGERRQQAFHHTDTIREIYRYVDSLGIPGIGNYQLVRSYPRKTYGRQQLEMS 378
Query: 352 LEEAGLHPQASLFIE 366
L++AG +P +L+IE
Sbjct: 379 LQDAGFYPSVTLYIE 393
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,083,398
Number of extensions: 259955
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 4
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)