BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0511600 Os10g0511600|AK073197
         (95 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0511600  Peptidase S28 family protein                        200   2e-52
Os10g0511400  Peptidase S28 family protein                        141   9e-35

>Os10g0511600 Peptidase S28 family protein
          Length = 95

 Score =  200 bits (508), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MKNGAASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGD 60
          MKNGAASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGD
Sbjct: 1  MKNGAASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGD 60

Query: 61 PSNCSSPAAVSTVRKQIASHISLWLSQCQEPTRAW 95
          PSNCSSPAAVSTVRKQIASHISLWLSQCQEPTRAW
Sbjct: 61 PSNCSSPAAVSTVRKQIASHISLWLSQCQEPTRAW 95



>Os10g0511400 Peptidase S28 family protein
          Length = 507

 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%)

Query: 5   AASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGDPSNC 64
           A SKIVF NGSQDPWRHASKQKSSK +PSY+I+C NCGH +DL GCPQ P  IEGD SNC
Sbjct: 404 AGSKIVFANGSQDPWRHASKQKSSKELPSYLIECSNCGHCSDLSGCPQAPSHIEGDSSNC 463

Query: 65  SSPAAVSTVRKQIASHISLWLSQCQE 90
           SSP AV+ VRKQI  HI LWLS+CQE
Sbjct: 464 SSPEAVNKVRKQIVDHIDLWLSECQE 489



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,805,368
Number of extensions: 144206
Number of successful extensions: 352
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 17,035,801
Length adjustment: 64
Effective length of query: 31
Effective length of database: 13,694,105
Effective search space: 424517255
Effective search space used: 424517255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)