BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0503200 Os10g0503200|AK072481
(577 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0503200 Similar to Dihydrofolate synthetase /folylpoly... 968 0.0
Os03g0111100 Similar to Dihydrofolate synthetase /folylpoly... 690 0.0
>Os10g0503200 Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase
Length = 577
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/494 (95%), Positives = 471/494 (95%)
Query: 84 TPRAAMASVAQPGVAAGSAEYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELE 143
TPRAAMASVAQPGVAAGSAEYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELE
Sbjct: 84 TPRAAMASVAQPGVAAGSAEYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELE 143
Query: 144 EPIARLKVVHVAGTKGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEE 203
EPIARLKVVHVAGTKGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEE
Sbjct: 144 EPIARLKVVHVAGTKGKGSTCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEE 203
Query: 204 KFIRYFWWCWNKLKDKTGGDIPMPAYFRFLALLAFKIFSDEQVKAPVVCGISSLGYDHME 263
KFIRYFWWCWNKLKDKTGGDIPMPAYFRFLALLAFKIFSDEQVKAPVVCGISSLGYDHME
Sbjct: 204 KFIRYFWWCWNKLKDKTGGDIPMPAYFRFLALLAFKIFSDEQVKAPVVCGISSLGYDHME 263
Query: 264 ILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASEXXXXXXXXXXXXXXXXXX 323
ILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASE
Sbjct: 264 ILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASELGVPLQVVQPLDPQQLDD 323
Query: 324 XXXXXHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQ 383
HGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQ
Sbjct: 324 QPLGLHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQ 383
Query: 384 IVPDPEVLSKDSSSLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTNSRK 443
IVPDPEVLSKDSSSLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTNSRK
Sbjct: 384 IVPDPEVLSKDSSSLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTNSRK 443
Query: 444 ILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQIDL 503
ILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQIDL
Sbjct: 444 ILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQIDL 503
Query: 504 SWQLSLQRVWEGLLHSNKGLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVLVTG 563
SWQLSLQRVWEGLLHSNKGLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVLVTG
Sbjct: 504 SWQLSLQRVWEGLLHSNKGLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVLVTG 563
Query: 564 SLHLVGDVLRLLKE 577
SLHLVGDVLRLLKE
Sbjct: 564 SLHLVGDVLRLLKE 577
>Os03g0111100 Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase
Length = 554
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/497 (68%), Positives = 389/497 (78%), Gaps = 22/497 (4%)
Query: 103 EYEEVLGCISSLITQKVRADTGNRGNQWELMAKYLQILELEEPIARLKVVHVAGTKGKGS 162
EYE+V+G +SSLITQKVRA +GNRGNQW+LMA YLQILELEEPIAR+KV+HVAGTKGKGS
Sbjct: 58 EYEDVMGRLSSLITQKVRAHSGNRGNQWDLMAHYLQILELEEPIARMKVIHVAGTKGKGS 117
Query: 163 TCTFAESILRSCGFRTGLFTSPHLMDVRERFRLNGLDISEEKFIRYFWWCWNKLKDKTGG 222
TCTF E+ILRSCGF TGLFTSPHLMDVRERFRLNG+DISEEKF++YFWWCWNKLK+KT
Sbjct: 118 TCTFTEAILRSCGFSTGLFTSPHLMDVRERFRLNGVDISEEKFLKYFWWCWNKLKEKTDD 177
Query: 223 DIPMPAYFRFLALLAFKIFSDEQ-------------------VKAPVVCGISSLGYDHME 263
DIPMP YFRFLALLAFKIFS EQ V+APVVCGI+SLGYDHME
Sbjct: 178 DIPMPTYFRFLALLAFKIFSAEQVDVAVLEVGLGGKFDATNVVEAPVVCGIASLGYDHME 237
Query: 264 ILGNTLGEIAGEKAGILKKGVPAYTVPQPEEAMSVLKHRASEXXXXXXXXXXXXXXXXXX 323
ILGNTLGEIAGEKAGI KKGVPAYT PQPEEAM LK RASE
Sbjct: 238 ILGNTLGEIAGEKAGIFKKGVPAYTAPQPEEAMIALKQRASELGVSLQVAHPLEPHQLKD 297
Query: 324 XXXXXHGEHQYMNAGLAVALVNTWLQRQGHFNILHKKHSVTLPDQFIEGLSSACLQGRAQ 383
GEHQY+NAGLAVAL +TWL++QGH + + LPDQFI GLS+A LQGRAQ
Sbjct: 298 QHLGLRGEHQYVNAGLAVALASTWLEKQGHVERIPLNRTDPLPDQFISGLSNASLQGRAQ 357
Query: 384 IVPDPEVLSKDSS---SLIFYLDGAHSPESMEICAKWFSCVTRKDEQQPGPLDQLHIGTN 440
I+ D +V S + SL+FYLDGAHSPESMEICA+WFS VT++D P + Q N
Sbjct: 358 IITDSQVNSGEEDKDCSLVFYLDGAHSPESMEICARWFSHVTKEDRTVPSSMVQSQSCGN 417
Query: 441 SRKILLFNCMSVRDPQRLLPCLLATCAQNGLQFDHALFVPNQSQYNKLGSHASPPSERVQ 500
S+KILLFNCMSVRDP RLLP LL T QNG+ F+ ALFVPNQSQYNKLG+++S P+E Q
Sbjct: 418 SQKILLFNCMSVRDPMRLLPHLLDTSTQNGVHFEMALFVPNQSQYNKLGTNSSAPAEPEQ 477
Query: 501 IDLSWQLSLQRVWEGLLHSNKGLNGSNSSTASSVFESLPLAIKWLRETAQQNQSTSYQVL 560
IDLSWQLSLQRVW+ LLH +KG+N +NSS S VFESLPLA++WLR A+QN+STS+QVL
Sbjct: 478 IDLSWQLSLQRVWQKLLHGDKGMNNTNSSENSLVFESLPLAMEWLRTNARQNRSTSFQVL 537
Query: 561 VTGSLHLVGDVLRLLKE 577
VTGSLHLVGDVLRL+K+
Sbjct: 538 VTGSLHLVGDVLRLVKK 554
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,340,525
Number of extensions: 681271
Number of successful extensions: 1240
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1236
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 471
Effective length of database: 11,501,117
Effective search space: 5417026107
Effective search space used: 5417026107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)